Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   J7T60_RS07935 Genome accession   NZ_CP072436
Coordinates   1518296..1521616 (-) Length   1106 a.a.
NCBI ID   WP_179971047.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513296..1526616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS07925 (J7T60_07845) - 1513526..1514259 (+) 734 Protein_1508 DUF554 domain-containing protein -
  J7T60_RS07930 (J7T60_07850) rexA 1514653..1518306 (-) 3654 WP_179971046.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  J7T60_RS07935 (J7T60_07855) rexB 1518296..1521616 (-) 3321 WP_179971047.1 ATP-dependent nuclease subunit B Machinery gene
  J7T60_RS07940 (J7T60_07860) - 1522108..1522759 (-) 652 Protein_1511 hypothetical protein -
  J7T60_RS07945 (J7T60_07865) - 1522812..1523243 (-) 432 Protein_1512 LytTR family DNA-binding domain-containing protein -
  J7T60_RS07950 - 1523461..1523847 (-) 387 WP_232085683.1 hypothetical protein -
  J7T60_RS07955 - 1523822..1524082 (-) 261 WP_223899633.1 hypothetical protein -
  J7T60_RS07960 (J7T60_07875) - 1524359..1524499 (-) 141 WP_022096687.1 hypothetical protein -
  J7T60_RS07965 (J7T60_07880) - 1524544..1525567 (-) 1024 Protein_1516 DUF6574 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126674.43 Da        Isoelectric Point: 5.0304

>NTDB_id=482912 J7T60_RS07935 WP_179971047.1 1518296..1521616(-) (rexB) [Streptococcus thermophilus strain S24735]
MKLLYTDMSQDLTEILTEQASSYAQKGKRVFYIAPSALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLLHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYTSQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVIPDYVTTDKEGNLSFARISRLLESRHDFSTVDETVTEQDKHALKVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVIFLEAVQLPSQM
VELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRRLDIVTQSNSKRGHFVAMSLFNAASEQLVLSQPQIINESQDD
MSVYLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVRYLRKRLDKDQVLIPK
VIDNVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYFLRYILELEELESIHPDARHHGTYLHRVFERVMGDSSS
ESFDDKLEKAIAQTNQDQPFEILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECEEVKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKTGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQVPQLNLAQIGLEKLAAQAHK
ELTYKGLFVASETEHLTGGNYDLQKTVTYDKEDLETLLDYNIKLFRSAAEVIRSGNFAINPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPKKGKKEAYLELMAKTEEENQMQVSENTISFPVIDHAVRVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=482912 J7T60_RS07935 WP_179971047.1 1518296..1521616(-) (rexB) [Streptococcus thermophilus strain S24735]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGTCTAGCTATGCTCAAAAGGG
GAAGAGGGTTTTTTATATTGCTCCTAGTGCCCTGTCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAAGTGTTGTTGCACATGGGCGATGATGAGCTCAAGGTCTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTAGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACAGTATTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCAGCTCAGGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAGCTTAGTGCCTTCTTTAAGGAAATTACCTCAGGGCATCTGGATGAGGCCTTGAGTAA
CACAGTTTTGGTCATTGATGGTTTTACCCGTTTCTCGGCTGAGGAGGAGGCTCTGGTTGCACTCTTGAACGACAAGTGCC
ACCAGATTGTAGTGGGGACCTATACTAGTCAAAAAGCTTATAAGGCCAATTTTGTTTATGGCAATGTTTATCAAGCCTCA
GTGGATTTCTTGAGGACTTTGGCTCAGACCTATAAGGTGATACCCGACTACGTGACGACAGACAAGGAGGGCAATCTTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGACGGTAACTGAGCAGGATAAGC
ATGCCCTGAAGGTTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCCCAGGTTGCCAAGAGTATTCGCCAGTTGCTGGCA
GATGGCAAGCGTTACAAGGATATTTTGGTCTTGCTTGGTGACGAGGAGAGTTATAAGCTTCACGTGGGGCAGATTTTCCG
AAAATTTGATATTCCTTATTATTTCGGTAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGGAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAACTACCGTGCTGAGGATTTGCTTAACCTTGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAGTATTATGTCAATTTTGCGGATATCAAGGGGCGTCATAAATTCTTGTCTGATTTTACAGC
TAATAGTCGTGATAAGTATAATTTAGACCAGATCAATGCCTTGCGGTCACAATTGATAGAGCCCTTGGACAAGTTTCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTGGTGATCTTTTTAGAGGCTGTGCAACTGCCAAGTCAGATG
GTTGAATTGTCCACCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTTTGGAAGGCTTTCACTCATATCTTGGA
GCAGGTTGAGACTATCTTTGGAGACGAATCGCTCTCAGTGGACGACTTTTTGTCTATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGACTTAATACAGCCACATTCGGCTCCG
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGACAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCACAGGAGATTGGATATTGTTACGCAGAGCAATAGTAAGCGAGGTCATTTTG
TGGCTATGTCGCTTTTCAATGCTGCTAGTGAACAATTAGTACTTAGTCAGCCACAAATTATAAATGAAAGTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTTCTTGACCTTGGTATTCCATTGGTGGAAAAGGGACGCAATCGTTTCGAAGCAAAGGG
GGACCAGATTGGGAACTATAGAGACCTTCTGTCGACAGTCATTGCCCTTAACAGTAGTCATTTGGATCTTGACTTGGACA
AAGAAACCCAGACTTTCTGGTCGGTTGCTGTACGTTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAG
GTGATTGACAATGTGACGACAACCAAGGTGGACGATCAGGTCATGCAGTTGGTCTTTCCGGAGGAAGAACCACTGAAATT
ATCAGCTACAGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATATTTTGGAACTTGAGGAGCTAG
AGTCTATCCATCCGGATGCTCGACACCACGGGACTTATTTACACCGAGTCTTTGAGCGTGTGATGGGTGATTCGTCATCA
GAAAGCTTCGATGATAAATTGGAAAAGGCCATTGCTCAGACCAATCAGGATCAACCTTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGTTTCTCTCGTCAGATTTTGGAGGACATTGCGCGTTCAACTGCCAGTGTTCTACGTGACAATGCGGCGG
TTAAGGTTGAGTGTGAGGAAGTCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACTGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGTGCTCTGGGTGTTGTTGACTATAAAACAGGTAAAAATGTCTTTGATATTCAGAAATTCTACAA
TGGCCTAAGTCCGCAATTGGTGACCTATCTGGAGGCTCTCCGTCAAACCTATAAGGTTGATGCTGATCAACTTTTTGGGG
CTATGTATCTTCACATGCAGGTCCCACAGCTTAACCTAGCTCAGATTGGTTTGGAAAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACTTATAAGGGACTTTTTGTGGCTTCAGAAACGGAGCATTTGACTGGTGGAAACTATGATCTGCAAAAGACTGT
CACCTATGACAAGGAGGATTTAGAAACCTTGTTGGACTACAATATTAAGCTCTTTAGGAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGATCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCACTTC
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCCAAAAAGGGCAAGAAGGAAGCCTATTTGGAGTT
GATGGCAAAAACTGAGGAAGAGAATCAGATGCAAGTTTCTGAAAATACTATCTCCTTTCCAGTCATTGATCATGCTGTGA
GAGTAGACAAAAAAGACCAGGAGGATAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.923

98.373

0.422