Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J7T60_RS05625 Genome accession   NZ_CP072436
Coordinates   1060503..1062173 (-) Length   556 a.a.
NCBI ID   WP_179970886.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055503..1067173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS05590 (J7T60_05545) - 1055545..1056237 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  J7T60_RS05595 (J7T60_05550) - 1056492..1057430 (+) 939 WP_014608411.1 dihydroorotate oxidase -
  J7T60_RS05600 (J7T60_05555) - 1057495..1057695 (-) 201 WP_002950995.1 hypothetical protein -
  J7T60_RS05605 (J7T60_05560) - 1057754..1058029 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  J7T60_RS05610 (J7T60_05565) - 1058166..1058735 (-) 570 WP_084829656.1 YpmS family protein -
  J7T60_RS05615 (J7T60_05570) - 1058728..1059603 (-) 876 WP_179970885.1 SGNH/GDSL hydrolase family protein -
  J7T60_RS05620 (J7T60_05575) - 1059596..1060432 (-) 837 WP_011226124.1 DegV family protein -
  J7T60_RS05625 (J7T60_05580) recN 1060503..1062173 (-) 1671 WP_179970886.1 DNA repair protein RecN Machinery gene
  J7T60_RS05630 (J7T60_05585) - 1062182..1062628 (-) 447 WP_084829658.1 arginine repressor -
  J7T60_RS05635 (J7T60_05590) - 1062576..1063442 (-) 867 WP_084829659.1 TlyA family RNA methyltransferase -
  J7T60_RS05640 (J7T60_05595) - 1063435..1064307 (-) 873 WP_022096738.1 polyprenyl synthetase family protein -
  J7T60_RS05645 (J7T60_05600) - 1064307..1064522 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  J7T60_RS05650 (J7T60_05605) xseA 1064500..1065840 (-) 1341 WP_011226129.1 exodeoxyribonuclease VII large subunit -
  J7T60_RS05655 (J7T60_05610) - 1066029..1066274 (-) 246 WP_011227295.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62527.72 Da        Isoelectric Point: 4.4999

>NTDB_id=482887 J7T60_RS05625 WP_179970886.1 1060503..1062173(-) (recN) [Streptococcus thermophilus strain S24735]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQVKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SYGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=482887 J7T60_RS05625 WP_179970886.1 1060503..1062173(-) (recN) [Streptococcus thermophilus strain S24735]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGAGCATCTAGCGAGG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGCTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGTAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTTATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.838

100

0.448