Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J7T60_RS01280 Genome accession   NZ_CP072436
Coordinates   233731..234327 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain S24735     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 228731..239327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS01265 (J7T60_01260) - 229412..229852 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  J7T60_RS01270 (J7T60_01265) pepC 229954..231291 (+) 1338 WP_011225417.1 aminopeptidase C -
  J7T60_RS01275 (J7T60_01270) pbp1a 231401..233731 (-) 2331 WP_372433480.1 penicillin-binding protein PBP1A -
  J7T60_RS01280 (J7T60_01275) recU 233731..234327 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  J7T60_RS01285 (J7T60_01280) - 234404..234919 (+) 516 WP_116920094.1 DUF1273 domain-containing protein -
  J7T60_RS01290 (J7T60_01285) gpsB 235028..235360 (+) 333 WP_014607932.1 cell division regulator GpsB -
  J7T60_RS01300 (J7T60_01295) - 235897..237063 (+) 1167 WP_014607933.1 class I SAM-dependent RNA methyltransferase -
  J7T60_RS01305 (J7T60_01300) - 237066..238928 (+) 1863 WP_179971160.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=482848 J7T60_RS01280 WP_002949408.1 233731..234327(-) (recU) [Streptococcus thermophilus strain S24735]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=482848 J7T60_RS01280 WP_002949408.1 233731..234327(-) (recU) [Streptococcus thermophilus strain S24735]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51