Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   F750_RS14830 Genome accession   NC_021055
Coordinates   3374827..3376239 (+) Length   470 a.a.
NCBI ID   WP_015577671.1    Uniprot ID   -
Organism   Streptomyces sp. PAMC 26508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3369827..3381239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS14810 (F750_3205) - 3370054..3370866 (-) 813 WP_014155562.1 sugar phosphate isomerase/epimerase family protein -
  F750_RS14815 (F750_3206) - 3370958..3371908 (-) 951 WP_014155561.1 Ppx/GppA phosphatase family protein -
  F750_RS14820 (F750_3207) - 3371941..3372783 (+) 843 WP_014155560.1 hypothetical protein -
  F750_RS14825 (F750_3208) - 3372863..3374632 (-) 1770 WP_041667801.1 BACON domain-containing protein -
  F750_RS14830 (F750_3210) radA/sms 3374827..3376239 (+) 1413 WP_015577671.1 DNA repair protein RadA Machinery gene
  F750_RS14835 (F750_3211) disA 3376319..3377443 (+) 1125 WP_014155557.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  F750_RS14840 (F750_3212) - 3377522..3378508 (-) 987 WP_014155556.1 aldo/keto reductase -
  F750_RS14845 (F750_3213) - 3378554..3379324 (-) 771 WP_015577672.1 thioesterase II family protein -
  F750_RS14850 (F750_3214) - 3379321..3380559 (-) 1239 WP_015577673.1 cytochrome P450 -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49530.64 Da        Isoelectric Point: 8.4875

>NTDB_id=48276 F750_RS14830 WP_015577671.1 3374827..3376239(+) (radA/sms) [Streptomyces sp. PAMC 26508]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDNHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=48276 F750_RS14830 WP_015577671.1 3374827..3376239(+) (radA/sms) [Streptomyces sp. PAMC 26508]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCTTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACGACCGCCGCGG
GCCGGGTGTCCTCCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGCAGGCGACCGCGCGCTCGACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGAGGCCTCGTGCCCGGTGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCGGCGAGCGACAACCACCGCACGCTCTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCCATCAACGACCACCTGTACCTCGCCGCCGAGACCGACCTCTCGGCGGTC
CTGGGACATCTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTGACCAAGGACGGCGCCATCGCGGGACCACGGCTCCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCACGCCTGCGGCTGGTGCGCGGCGTCAAGAACAGGTACGGGGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTGGCGGATCCGTCGGGGCTCTTCCTCACCCGCCGCGACGAGCCGGTCC
CCGGCACCTGCCTGACGGTCACCCTCGAGGGCAAGCGCCCACTCGTCGCCGAGGTGCAGGCCCTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGTGCGACGGTGGGCGGCGTGAAGCTCACGGAACCGGCCGCGGACC
TCGCGATCGCCCTGGCACTGGCCAGTGCGGCCAGCGACACACCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGT
CTCGCCGGGGAGGTCAGGAGGGTCACCGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCCGGGCAGGTCCCGGCCGGCATGAAGGTCACGGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TCCCCCGCCGGTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

41.722

96.383

0.402
  radA Streptococcus pneumoniae D39

41.722

96.383

0.402
  radA Streptococcus pneumoniae R6

41.722

96.383

0.402
  radA Streptococcus pneumoniae TIGR4

41.722

96.383

0.402
  radA Streptococcus mitis SK321

43.124

91.277

0.394
  radA Streptococcus mitis NCTC 12261

43.124

91.277

0.394

Multiple sequence alignment