Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PAJ_RS20750 Genome accession   NC_017531
Coordinates   4507909..4509291 (+) Length   460 a.a.
NCBI ID   WP_041930968.1    Uniprot ID   -
Organism   Pantoea ananatis AJ13355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4502909..4514291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAJ_RS20720 (PAJ_3749) rsmC 4503354..4504385 (-) 1032 WP_041930966.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  PAJ_RS20725 (PAJ_3750) - 4504491..4504901 (+) 411 WP_013024509.1 DNA polymerase III subunit psi -
  PAJ_RS20730 (PAJ_3751) rimI 4504873..4505313 (+) 441 WP_041930967.1 ribosomal protein S18-alanine N-acetyltransferase -
  PAJ_RS20735 (PAJ_3752) yjjG 4505333..4506013 (+) 681 WP_014595280.1 pyrimidine 5'-nucleotidase -
  PAJ_RS20740 (PAJ_3753) - 4506142..4506810 (-) 669 WP_014595281.1 YtjB family periplasmic protein -
  PAJ_RS20745 (PAJ_3754) serB 4506918..4507895 (+) 978 WP_014595282.1 phosphoserine phosphatase -
  PAJ_RS20750 (PAJ_3755) radA 4507909..4509291 (+) 1383 WP_041930968.1 DNA repair protein RadA Machinery gene
  PAJ_RS20755 (PAJ_3756) nadR 4509384..4510622 (+) 1239 WP_014595284.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  PAJ_RS20760 (PAJ_3757) - 4510951..4511883 (+) 933 WP_014595285.1 transcriptional regulator -
  PAJ_RS20765 - 4511880..4512329 (+) 450 WP_041930969.1 hypothetical protein -
  PAJ_RS20770 (PAJ_3758) - 4512572..4513126 (+) 555 WP_014606641.1 fimbrial protein -
  PAJ_RS20775 (PAJ_3759) - 4513166..4513855 (+) 690 WP_041930970.1 molecular chaperone -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49478.15 Da        Isoelectric Point: 7.6663

>NTDB_id=48275 PAJ_RS20750 WP_041930968.1 4507909..4509291(+) (radA) [Pantoea ananatis AJ13355]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=48275 PAJ_RS20750 WP_041930968.1 4507909..4509291(+) (radA) [Pantoea ananatis AJ13355]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGCCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGAACATGAAAACACTGTATGTCACCGGCGAAGAATCTT
TACAACAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTGAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATCGCCGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCATGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCCGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACGTCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGTCGTGTTGCCGTCGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGCCCGGTGCCCAGCGGCCAGGAACGGATTTCAGAAGCGGCTAAACATGGCTTCAAACGGGC
GATTGTGCCTGCCGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGTGAAAAAGTTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.489
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus mitis SK321

43.297

98.913

0.428
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42

Multiple sequence alignment