Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F750_RS10605 Genome accession   NC_021055
Coordinates   2385319..2387241 (+) Length   640 a.a.
NCBI ID   WP_014156405.1    Uniprot ID   A0ABZ1K412
Organism   Streptomyces sp. PAMC 26508     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2380319..2392241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS10570 (F750_2309) - 2380399..2380632 (-) 234 WP_015577068.1 type II toxin-antitoxin system VapB family antitoxin -
  F750_RS10590 (F750_2313) - 2381619..2381921 (+) 303 WP_015577069.1 YtxH domain-containing protein -
  F750_RS10595 (F750_2314) - 2382004..2383449 (+) 1446 WP_014156407.1 FGGY family carbohydrate kinase -
  F750_RS10600 (F750_2315) rcrP 2383586..2385319 (+) 1734 WP_015577070.1 ABC transporter ATP-binding protein Regulator
  F750_RS10605 (F750_2316) rcrQ 2385319..2387241 (+) 1923 WP_014156405.1 ABC transporter ATP-binding protein Regulator
  F750_RS10610 (F750_2317) - 2387322..2388398 (-) 1077 WP_015577071.1 RNA polymerase sigma factor -
  F750_RS10615 (F750_2318) dnaG 2388575..2390482 (-) 1908 WP_014156403.1 DNA primase -
  F750_RS10620 (F750_2319) - 2390578..2391837 (-) 1260 WP_015577072.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69209.61 Da        Isoelectric Point: 4.9850

>NTDB_id=48265 F750_RS10605 WP_014156405.1 2385319..2387241(+) (rcrQ) [Streptomyces sp. PAMC 26508]
MAGPGGRMMMGPTERSMDFKGSGKRLLRRFSKEKASLYLMLGAVALSVALSVVGPKILGAATDLIFAGVVGRQMPDGTTK
EQAIESLRAKGDDGLADMLTGVDFTPGTGIDFGAVGQVLLAVLVVYVGAGLLMLVSTRVSIRVINRVVFQLREDLQTKLA
RLPLSYFDRQQRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTIPLSVFVAARVGKRS
QPHFVAQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFALLDAEEQAPDPDPAERPEELRGSVALEHV
SFRYDPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAARMTRDELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQALAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=48265 F750_RS10605 WP_014156405.1 2385319..2387241(+) (rcrQ) [Streptomyces sp. PAMC 26508]
ATGGCAGGGCCGGGCGGACGGATGATGATGGGGCCCACCGAGCGCTCCATGGACTTCAAGGGATCCGGGAAGCGGCTGCT
GAGGAGGTTCAGCAAGGAGAAGGCGTCGCTGTACCTGATGCTGGGTGCCGTGGCGCTGAGCGTGGCGCTCTCCGTCGTGG
GGCCCAAGATCCTCGGTGCGGCGACCGACCTGATCTTCGCGGGTGTCGTCGGACGGCAGATGCCGGACGGCACCACCAAG
GAACAGGCCATCGAGAGCCTGCGCGCGAAGGGCGACGACGGGCTCGCCGACATGCTGACCGGGGTGGACTTCACGCCGGG
CACCGGCATCGACTTCGGCGCCGTGGGACAGGTCCTGCTCGCGGTGCTGGTGGTCTACGTCGGCGCGGGGCTGCTGATGC
TGGTGTCGACCCGGGTGTCGATCCGGGTGATCAACCGGGTCGTCTTCCAGCTGCGCGAGGACCTGCAGACCAAGCTGGCA
CGGCTCCCGCTCTCGTACTTCGACCGGCAGCAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACATCTC
CCAGACGATGCAGCAGACGATGGGCCAGCTGATCAACTCCCTGCTGACCATCGTCGGCGTGCTGATCATGATGTTCTGGA
TCTCGCCCCTGCTGGCCCTGGTCGCACTGGTGACGATCCCGCTGTCGGTGTTCGTCGCGGCGCGGGTCGGCAAGCGGTCG
CAGCCGCACTTCGTGGCGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACACCCT
GGTGAAGGTCTTCGGTCGGCAGGAGGAGTCCGCCCGGGACTTCGCCGAGCAGAACGAGGCCTTGTACGAGGCGGGCTTCA
AAGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCGGTCGTC
GGCGGGCTGCGCGTGGCGTCGGGTGCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGGATCGCGTCGGCGGAGCGGGTCTTCGCCCTGCTGG
ACGCCGAGGAGCAGGCGCCCGACCCTGATCCCGCCGAGCGGCCCGAGGAGCTGCGCGGCAGCGTCGCGCTGGAGCACGTG
TCCTTCCGGTACGACCCGGACAAGCCGCTCATCGAGGATCTCTCGCTGAGCGTGGAGCCCGGCCACACGGTCGCCATCGT
GGGGCCGACCGGTGCCGGCAAGACGACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCACCC
TCGACGGGGTCGACGCGGCCCGGATGACGCGCGACGAACTCCGCTCGGGCATAGGGATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCCTCGCGCGAGGTGACCCGGGAGGAGATCGAGGAAGCGGCGCG
TGCGGCCCACGCCGACCGTTTCGTCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCGCCGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCACGGGCATTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCCACC
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTGGCCCACGGCCGTACGAGCTTCGTGAT
CGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGGGCACGC
ACGACGAGCTGCTGGCGGCCGAGGGGGCCTACGCCCGGCTGTACGCGGCCCAGTTCGCCCAGGCGCTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.23

85.469

0.361