Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   F750_RS10600 Genome accession   NC_021055
Coordinates   2383586..2385319 (+) Length   577 a.a.
NCBI ID   WP_015577070.1    Uniprot ID   -
Organism   Streptomyces sp. PAMC 26508     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378586..2390319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS10555 - 2378632..2379027 (-) 396 WP_078494645.1 DUF6281 family protein -
  F750_RS35510 - 2379283..2379531 (+) 249 Protein_2136 tellurium resistance protein TerC -
  F750_RS10565 (F750_2308) - 2379995..2380402 (-) 408 WP_015577067.1 PIN domain nuclease -
  F750_RS10570 (F750_2309) - 2380399..2380632 (-) 234 WP_015577068.1 type II toxin-antitoxin system VapB family antitoxin -
  F750_RS10590 (F750_2313) - 2381619..2381921 (+) 303 WP_015577069.1 YtxH domain-containing protein -
  F750_RS10595 (F750_2314) - 2382004..2383449 (+) 1446 WP_014156407.1 FGGY family carbohydrate kinase -
  F750_RS10600 (F750_2315) rcrP 2383586..2385319 (+) 1734 WP_015577070.1 ABC transporter ATP-binding protein Regulator
  F750_RS10605 (F750_2316) rcrQ 2385319..2387241 (+) 1923 WP_014156405.1 ABC transporter ATP-binding protein Regulator
  F750_RS10610 (F750_2317) - 2387322..2388398 (-) 1077 WP_015577071.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62503.60 Da        Isoelectric Point: 5.7177

>NTDB_id=48264 F750_RS10600 WP_015577070.1 2383586..2385319(+) (rcrP) [Streptomyces sp. PAMC 26508]
MLIKLLRTYLGPYRRPIVLLVLLQLLQTCASLYLPSLNADIIDNGVVRGDTGYILEFGGVMIAVSVLQIVCNIGAVHFGA
RTASALGRDVRASVFGRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVSLIVRRMRPLFRTMQVRLDAVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKVLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEQLWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQEPEIYLFDDSFSALDYATDAALRGALSQETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=48264 F750_RS10600 WP_015577070.1 2383586..2385319(+) (rcrP) [Streptomyces sp. PAMC 26508]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGCCCGTACAGACGTCCCATCGTGCTGCTGGTGCTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTTCGGGGTGACACGGGTTACA
TCCTCGAGTTCGGCGGCGTGATGATCGCCGTCAGCGTCCTCCAGATCGTCTGCAACATCGGGGCGGTCCACTTCGGGGCC
CGGACGGCGTCCGCGCTCGGGCGGGACGTGCGTGCGTCGGTCTTCGGCCGGGTGCAGTCGTTCTCCGCGCGCGAGGTGGG
GCGGTTCGGGGCCCCTTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGTTGTCGGCGGTG
CTGCTGGCCGTACTGCCCGTCCTCGGTGTCTCGGTGAGCCTGATCGTGCGGCGGATGCGGCCTCTGTTCCGCACGATGCA
GGTACGGCTGGACGCGGTCAACCGGGTGCTGCGTGAGCAGATCACCGGTAACCGCGTGATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACGGAACTGACCGACGTCGCGCTGTCGACGGGGCGGCTGATGGCCCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGTGTGGTGCCG
CCCACCGCTCCGGTGACGAAGGTGCTGAAGCACGGGCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTGCGCTCGGTCGATCTGGTGGCCCGGCCCGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGACGTGCTGGTCGACGGTACGGATGTGCGG
ACACTGGATCCCGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAGCAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAGCACGGCCTGGACGCGCCGATCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGGCAGCGTCTC
GCGATCGCGCGGACGCTGGTGCAGGAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCTCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGGGCGCTGTCCCAGGAGACGGCGGGGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGACGGGCAGCCATCACGAGCTCATGGAAGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409