Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IDM39_RS05105 Genome accession   NZ_CP061509
Coordinates   952441..954255 (+) Length   604 a.a.
NCBI ID   WP_247224846.1    Uniprot ID   -
Organism   Weissella cibaria strain NH9449     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 947441..959255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM39_RS05080 (IDM39_05070) - 947691..948008 (+) 318 WP_247224841.1 PTS sugar transporter subunit IIB -
  IDM39_RS05085 (IDM39_05075) - 948054..948377 (+) 324 WP_247224842.1 PTS lactose/cellobiose transporter subunit IIA -
  IDM39_RS05090 (IDM39_05080) - 948383..949834 (+) 1452 WP_247224843.1 6-phospho-beta-glucosidase -
  IDM39_RS05095 (IDM39_05085) - 949901..951265 (+) 1365 WP_247224844.1 PTS sugar transporter subunit IIC -
  IDM39_RS05100 (IDM39_05090) - 951367..952401 (+) 1035 WP_247224845.1 competence protein CoiA family protein -
  IDM39_RS05105 (IDM39_05095) pepF 952441..954255 (+) 1815 WP_247224846.1 oligoendopeptidase F Regulator
  IDM39_RS05110 (IDM39_05100) - 954342..955061 (-) 720 WP_043709532.1 MIP/aquaporin family protein -
  IDM39_RS05115 (IDM39_05105) - 955369..955758 (+) 390 WP_010372520.1 DUF948 domain-containing protein -
  IDM39_RS05120 (IDM39_05110) - 955774..956346 (+) 573 WP_010372524.1 hypothetical protein -
  IDM39_RS05125 (IDM39_05115) ccpA 956405..957406 (-) 1002 WP_010373031.1 catabolite control protein A -
  IDM39_RS05130 (IDM39_05120) - 957658..958758 (+) 1101 WP_247224847.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67737.55 Da        Isoelectric Point: 4.2890

>NTDB_id=482620 IDM39_RS05105 WP_247224846.1 952441..954255(+) (pepF) [Weissella cibaria strain NH9449]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AASGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEQRLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=482620 IDM39_RS05105 WP_247224846.1 952441..954255(+) (pepF) [Weissella cibaria strain NH9449]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGCCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAATCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
GGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGGGCGTACAAGCATTACTTCGAGAGTATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTTCGGGGGATGTTTTTGGGGCGTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCAGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCAAGTCACGTG
AAAGGCCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAGGCATTAAAGGCGTTGGCACCATTGGGGGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTATTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGCCAAACTCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCGTTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGCCGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCCGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCCGGGCTTGATATGACTAAGCCAGATTACTTGCGTGACACATTCAAAGTGTT
CGAACAACGCTTGAATGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.299

97.848

0.522