Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IDM39_RS03070 Genome accession   NZ_CP061509
Coordinates   508887..510260 (+) Length   457 a.a.
NCBI ID   WP_247224667.1    Uniprot ID   -
Organism   Weissella cibaria strain NH9449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 503887..515260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM39_RS03035 (IDM39_03030) budA 504201..504920 (+) 720 WP_247224666.1 acetolactate decarboxylase -
  IDM39_RS03040 (IDM39_03035) - 505006..506013 (+) 1008 WP_099088473.1 zinc-binding alcohol dehydrogenase family protein -
  IDM39_RS12635 (IDM39_03040) - 506422..507309 (+) 888 WP_281493143.1 LysM peptidoglycan-binding domain-containing protein -
  IDM39_RS03055 (IDM39_03045) - 507370..507912 (+) 543 WP_099088471.1 NlpC/P60 family protein -
  IDM39_RS03060 (IDM39_03050) - 507956..508234 (+) 279 WP_099088470.1 GNAT family N-acetyltransferase -
  IDM39_RS03065 (IDM39_03055) - 508330..508872 (+) 543 WP_085639321.1 dUTP diphosphatase -
  IDM39_RS03070 (IDM39_03060) radA 508887..510260 (+) 1374 WP_247224667.1 DNA repair protein RadA Machinery gene
  IDM39_RS03075 (IDM39_03065) - 510276..511379 (+) 1104 WP_099088468.1 PIN/TRAM domain-containing protein -
  IDM39_RS03080 (IDM39_03070) gltX 511459..512955 (+) 1497 WP_099088467.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49251.38 Da        Isoelectric Point: 5.3902

>NTDB_id=482618 IDM39_RS03070 WP_247224667.1 508887..510260(+) (radA) [Weissella cibaria strain NH9449]
MAKTKNQFVCSNCGYVSQRYMGRCSNCGAWGTFVEEVIQPEKADRKSRVNLAGQIAKVERLGQVSIEETPRVDTQIDEFN
RVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSSQLANSGGTILYVAGEESASQIKLRAERLGVRGDADFFLYPETDMSQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNEGGLAEVTNPSGLFLEDRLSDASGSAVVIAMEGSRPILVEVQALVTPTVF
GNAQRTAAGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAVAVAIASSYRDKGTRATDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPQHSVDTMKDIPGIQIIGVATLADALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=482618 IDM39_RS03070 WP_247224667.1 508887..510260(+) (radA) [Weissella cibaria strain NH9449]
ATGGCAAAAACAAAAAACCAGTTTGTATGTTCTAACTGTGGGTATGTTTCACAACGTTACATGGGACGTTGCTCTAACTG
TGGTGCCTGGGGAACGTTCGTTGAAGAAGTTATTCAACCGGAAAAGGCGGACCGAAAGTCACGCGTTAACCTGGCTGGAC
AAATTGCGAAGGTTGAGCGATTAGGCCAAGTTAGCATCGAGGAGACGCCACGTGTCGATACGCAAATTGATGAATTTAAC
CGGGTACTTGGTGGCGGAATCGTACCTGGGTCAATGGTTTTGATCGGTGGTGACCCAGGGATTGGAAAGTCAACGTTGCT
ACTTCAGGTATCAAGTCAGTTGGCCAACTCAGGCGGAACGATTTTGTACGTCGCTGGAGAAGAGAGTGCTTCACAGATTA
AGCTGCGAGCAGAACGTTTGGGAGTTCGCGGTGATGCGGATTTCTTCTTGTATCCAGAAACGGATATGAGCCAAATTCGC
AAGGCTATCGATGAAACAAAGCCAGATTACGTCATTATCGACTCAATCCAAACCATGCAACAACCAGATGTTTCATCAGC
CGTTGGATCAGTTGCACAAATTCGTGAAACGACTGCTGAATTGCTCCAAATCGCGAAGACAAATGGCATTACCATTTTTA
TCGTTGGTCACGTGACCAAAGATGGTGCCATCGCCGGACCAAAGATTTTGGAACACATGGTGGATACGGTACTCTATTTT
GAGGGTGATAACCAGCGTAGTTTCCGGTTGTTGCGAGCTGTTAAGAATCGATTTGGTTCCACAAATGAGTTAGGAGTCTT
TGAAATGAACGAGGGTGGTTTGGCGGAAGTGACGAACCCATCTGGTTTATTCTTGGAAGACCGTCTCTCGGACGCAAGTG
GTTCGGCAGTGGTCATTGCGATGGAGGGCTCTCGACCAATTTTGGTTGAAGTCCAGGCGTTGGTGACACCAACCGTCTTT
GGTAATGCCCAACGCACTGCAGCCGGTATCGATCGCAATCGTATTTCATTGTTGATGGCTGTCTTAGAAAAGCGCGCAAA
CTTGTTGTTGCAGAACCAAGATGCTTATGTGCGTGCTGCGGGTGGTGTGAAGTTGGACGAACCAGCTATCGATTTGGCTG
TTGCAGTTGCAATTGCTTCGAGTTACCGGGATAAGGGGACACGGGCAACTGACGCATTTGTTGGTGAAATTGGTTTGACT
GGTGAAATCCGGCGGGTGCCAAATGTGGTTGATCGCATTCTTGAAGCGAAAAAACTTGGTTTCAAACGAGTATTTGTGCC
ACAGCACTCAGTTGATACAATGAAGGATATACCAGGGATTCAAATTATCGGTGTGGCCACATTGGCAGATGCTTTACGGT
TGGCATTAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.355

99.125

0.628
  radA Streptococcus mitis SK321

63.355

99.125

0.628
  radA Streptococcus pneumoniae Rx1

63.355

99.125

0.628
  radA Streptococcus pneumoniae D39

63.355

99.125

0.628
  radA Streptococcus pneumoniae R6

63.355

99.125

0.628
  radA Streptococcus pneumoniae TIGR4

63.355

99.125

0.628
  radA Bacillus subtilis subsp. subtilis str. 168

59.737

100

0.597