Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IC803_RS17250 Genome accession   NZ_CP061474
Coordinates   3424258..3424752 (+) Length   164 a.a.
NCBI ID   WP_020961642.1    Uniprot ID   A0A1V9BBH5
Organism   Geobacillus sp. 46C-IIa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3419258..3429752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS17225 (IC803_17225) - 3419306..3420202 (+) 897 WP_081207966.1 mechanosensitive ion channel family protein -
  IC803_RS17230 (IC803_17230) - 3420218..3420415 (+) 198 WP_063167096.1 DUF951 domain-containing protein -
  IC803_RS17235 (IC803_17235) - 3420490..3422517 (+) 2028 WP_081207965.1 molybdopterin-dependent oxidoreductase -
  IC803_RS17240 (IC803_17240) ychF 3422615..3423715 (+) 1101 WP_081207964.1 redox-regulated ATPase YchF -
  IC803_RS17245 (IC803_17245) rpsF 3423941..3424228 (+) 288 WP_081207963.1 30S ribosomal protein S6 -
  IC803_RS17250 (IC803_17250) ssbA 3424258..3424752 (+) 495 WP_020961642.1 single-stranded DNA-binding protein Machinery gene
  IC803_RS17255 (IC803_17255) rpsR 3424786..3425022 (+) 237 WP_008880812.1 30S ribosomal protein S18 -
  IC803_RS17260 (IC803_17260) - 3425108..3426034 (+) 927 WP_081207962.1 YybS family protein -
  IC803_RS17265 (IC803_17265) - 3426081..3428057 (+) 1977 WP_081207961.1 DHH family phosphoesterase -
  IC803_RS17270 (IC803_17270) rplI 3428054..3428503 (+) 450 WP_063167104.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18378.29 Da        Isoelectric Point: 4.8466

>NTDB_id=482584 IC803_RS17250 WP_020961642.1 3424258..3424752(+) (ssbA) [Geobacillus sp. 46C-IIa]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRHPNEKGFGRIDEDPFANDGQTIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=482584 IC803_RS17250 WP_020961642.1 3424258..3424752(+) (ssbA) [Geobacillus sp. 46C-IIa]
ATGATTAACCGTGTCATCTTAGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGCCCGTTCACGAACCAGCAGGGCGAGCGGGAAGCCGATTTTATCCAATGTGTCGTTT
GGCGTCGCCAGGCGGAAAACGTCGCCAACTTCTTGAAAAAAGGAAGCTTGGCCGGGGTGGACGGCCGGCTGCAAACCCGC
AGCTATGAAAACCAAGAAGGCCGGCGCGTGTATGTGACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAACGAGGGGCAGCAGCGGGCGGCTACTATGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGGC
ATCCGAATGAAAAAGGGTTTGGCCGCATCGATGAAGATCCTTTCGCCAATGACGGTCAGACAATCGATATTTCTGACGAT
GATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9BBH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.616
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

64.634

0.421