Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IC803_RS16650 Genome accession   NZ_CP061474
Coordinates   3309359..3310732 (-) Length   457 a.a.
NCBI ID   WP_081210603.1    Uniprot ID   A0A1V9B5W1
Organism   Geobacillus sp. 46C-IIa     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3304359..3315732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS16630 (IC803_16630) gltX 3305153..3306622 (-) 1470 WP_081210611.1 glutamate--tRNA ligase -
  IC803_RS16635 (IC803_16635) ispF 3306852..3307334 (-) 483 WP_081210609.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IC803_RS16640 (IC803_16640) ispD 3307349..3308035 (-) 687 WP_081210607.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IC803_RS16645 (IC803_16645) - 3308057..3309151 (-) 1095 WP_081210605.1 PIN/TRAM domain-containing protein -
  IC803_RS16650 (IC803_16650) radA 3309359..3310732 (-) 1374 WP_081210603.1 DNA repair protein RadA Machinery gene
  IC803_RS16655 (IC803_16655) clpC 3310806..3313241 (-) 2436 WP_081210601.1 ATP-dependent protease ATP-binding subunit ClpC -
  IC803_RS16660 (IC803_16660) - 3313238..3314329 (-) 1092 WP_081210599.1 protein arginine kinase -
  IC803_RS16665 (IC803_16665) - 3314334..3314882 (-) 549 WP_081210597.1 UvrB/UvrC motif-containing protein -
  IC803_RS16670 (IC803_16670) ctsR 3314897..3315358 (-) 462 WP_063167019.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49310.77 Da        Isoelectric Point: 7.4333

>NTDB_id=482579 IC803_RS16650 WP_081210603.1 3309359..3310732(-) (radA) [Geobacillus sp. 46C-IIa]
MVKKRTKFVCQECGYESAKWLGRCPGCQTWNSFVEEIERAKPAARGAFLHSEPSGPAKPVPITAVTAAQEPRIETDSAEL
NRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESVKQVKLRAGRLRAESNQLYVLAEADLEYIV
TAIETIQPACVIVDSIQTVYRTDITSAPGSVAQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLREVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGLDHSRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRVIVPNNNLTGWQPPAGVNVIGVSHVAEALEHTML

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=482579 IC803_RS16650 WP_081210603.1 3309359..3310732(-) (radA) [Geobacillus sp. 46C-IIa]
ATGGTGAAAAAGAGAACAAAATTCGTTTGCCAAGAATGTGGGTATGAATCAGCCAAATGGCTCGGCCGCTGTCCGGGCTG
CCAAACGTGGAATTCGTTCGTTGAAGAAATTGAGCGAGCGAAACCGGCTGCGCGCGGGGCGTTTCTTCATTCCGAGCCAT
CGGGGCCGGCCAAACCGGTTCCGATTACAGCCGTTACGGCAGCGCAAGAGCCGCGCATTGAAACGGACAGTGCGGAGCTC
AATCGCGTGCTCGGCGGGGGAATCGTCAAAGGCTCGCTTGTCTTAATTGGCGGCGATCCAGGCATCGGCAAATCGACGTT
ACTGCTACAGACATCAGCGCAGCTTGCTGCGGCCGGACACACGGTGTTGTATATATCCGGTGAGGAATCGGTGAAGCAAG
TGAAGCTGCGCGCCGGGCGCCTCCGTGCCGAGTCCAATCAACTGTATGTGTTAGCGGAGGCGGATTTGGAATACATTGTA
ACAGCAATTGAAACGATTCAGCCTGCCTGTGTGATTGTCGATTCCATTCAGACGGTGTACCGGACTGATATTACGTCAGC
GCCGGGCAGCGTCGCCCAAGTGCGCGAGTGCACCGCTGAGCTGATGAAAATCGCCAAGACGAAAGGCATCGCCATTTTCA
TTGTCGGCCATGTGACGAAAGAAGGAGCGATCGCTGGGCCACGCTTGCTTGAGCATATGGTCGATACGGTTCTTTATTTT
GAAGGGGAGCGGCATCATACGTACCGCATTTTGCGGGCGGTGAAAAACCGCTTCGGTTCGACGAATGAAATCGGCATTTT
TGAAATGCGTGACATCGGGCTGCGAGAGGTGGAAAACCCGTCGGAAGTGTTTTTGGAAGAGCGGTCGCGCGGGGCGGCTG
GCTCGACGGTTGTCGCGGCCATGGAAGGGACGCGCCCGGTGCTCGTTGAAATTCAGGCGCTCGTTTCGCCGACGAGTTTT
GGCAATCCAAGGCGGATGGCGACCGGCCTCGACCATAGCCGCGTATCGCTGCTCATGGCCGTGCTTGAAAAGCGGGTGGG
GCTGCTGTTGCAAAACCAGGACGCCTATTTGAAGGTGGCTGGCGGGGTAAAGCTTGACGAACCGGCCATCGATTTGGCGG
TCGCTGTCAGCATCGCCTCGAGTTTCCGCGACCGGCCAACCAACCCGGCCGATGTCATTATCGGTGAGGTCGGCTTGACC
GGGGAGGTGCGCCGTGTTTCCCGTATTGAACAACGCGTGCAAGAGGCTGTCAAATTAGGGTTTTCCCGTGTCATTGTGCC
AAACAACAATTTGACCGGCTGGCAGCCGCCTGCAGGCGTCAACGTGATCGGTGTTTCGCATGTGGCCGAGGCGCTCGAGC
ATACGATGTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9B5W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.179

100

0.742
  radA Streptococcus mitis NCTC 12261

64.459

99.125

0.639
  radA Streptococcus mitis SK321

64.238

99.125

0.637
  radA Streptococcus pneumoniae Rx1

63.596

99.781

0.635
  radA Streptococcus pneumoniae D39

63.596

99.781

0.635
  radA Streptococcus pneumoniae R6

63.596

99.781

0.635
  radA Streptococcus pneumoniae TIGR4

63.596

99.781

0.635