Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IC803_RS12965 Genome accession   NZ_CP061474
Coordinates   2605629..2607452 (-) Length   607 a.a.
NCBI ID   WP_081209986.1    Uniprot ID   A0A1V9B8F5
Organism   Geobacillus sp. 46C-IIa     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2600629..2612452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS12930 (IC803_12930) - 2601275..2601913 (-) 639 WP_063165585.1 GTP pyrophosphokinase family protein -
  IC803_RS12935 (IC803_12935) - 2602039..2602416 (-) 378 WP_081209974.1 hypothetical protein -
  IC803_RS12940 (IC803_12940) - 2602551..2603138 (+) 588 WP_081209976.1 CYTH domain-containing protein -
  IC803_RS12945 (IC803_12945) - 2603138..2603743 (+) 606 WP_081209978.1 lytic transglycosylase domain-containing protein -
  IC803_RS12950 (IC803_12950) - 2603845..2604258 (+) 414 WP_081209980.1 globin -
  IC803_RS12955 (IC803_12955) spxH 2604251..2605144 (+) 894 WP_081209982.1 ClpXP adapter protein SpxH -
  IC803_RS12960 (IC803_12960) - 2605418..2605615 (+) 198 WP_081209984.1 hypothetical protein -
  IC803_RS12965 (IC803_12965) pepF 2605629..2607452 (-) 1824 WP_081209986.1 oligoendopeptidase F Regulator
  IC803_RS12970 (IC803_12970) - 2607485..2608774 (-) 1290 WP_143421094.1 competence protein CoiA -
  IC803_RS12975 (IC803_12975) cls 2608943..2610451 (-) 1509 WP_081209988.1 cardiolipin synthase -
  IC803_RS12980 (IC803_12980) mecA 2610547..2611227 (-) 681 WP_081209990.1 adaptor protein MecA -
  IC803_RS12985 (IC803_12985) - 2611443..2612111 (+) 669 WP_081209993.1 TerC family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70350.25 Da        Isoelectric Point: 5.0901

>NTDB_id=482568 IC803_RS12965 WP_081209986.1 2605629..2607452(-) (pepF) [Geobacillus sp. 46C-IIa]
MTVEENKATKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKALIPKISEYKGRLRESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNAFYQGLNDRAKSLYSEASSAMAFIVPEMLDIDEAVLRSFLAQYEPLRLYEHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYSSAREAALDANKIPESVYDNLIATIHEHLPLLHRYVRLRKNVLGLDELHMYDLYAPLVQDV
KMEVTYDEAKQYMLDGLAPLGEEYVAIIKEGLENRWVDVRENRGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDHLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAKTLTSLYYDLNKKYFGEDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=482568 IC803_RS12965 WP_081209986.1 2605629..2607452(-) (pepF) [Geobacillus sp. 46C-IIa]
GTGACGGTGGAAGAGAACAAGGCAACGAAGTCGCTCCCGTCCCGGAGCGAAATACCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCGACCGATGACGCTTGGGAACAGGAGTTTCAGCAAGTGAAGGCGCTGATCCCGAAGATCAGCGAATACA
AAGGGCGGCTTCGCGAATCGCCAGAAGTGATGTATGAAGCGCTGCAATATCAAGATGAAGTGTCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTACGACCAAGACACGACGAACGCGTTTTACCAAGGGCTCAACGATCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATGTTGGACATTGATGAAGCGGTGTTGCGTTCGT
TTTTGGCGCAATACGAACCGCTCAGGCTGTATGAACACGCGCTAGATGAAATTACGCGCCAGCGCCCGCACGTCTTGTCA
GCTGAAGAAGAAGCGCTGTTGGCACAGGCGGCTGAGGTCATGCAGGCGACATCATCCACGTTCAGTGCGTTAAACAATGC
TGACTTAACGTTCCCGACGATCCGCGACGAAAACGGAGATGAGGTGGAAGTGACGCACGGCCGGTTTATCCGCTTTTTGG
AAAGCACCGACCGCCGCGTTCGCCGCGATGCGTTTCATGCGGTATACCATACGTACGAGAAGTTTCAGAACACGTTTGCC
AATACGCTTGCGGGCACGGTGAAGAAAGACAACTTTTTCGCCCGTGTCCGCCGCTATAGCTCAGCGCGGGAAGCGGCATT
GGATGCGAACAAGATTCCGGAGAGCGTCTATGACAATTTAATTGCCACGATTCACGAGCATTTGCCGCTGTTGCACCGGT
ATGTCCGGCTGCGCAAAAACGTGCTTGGACTCGACGAGTTGCATATGTACGACTTATATGCCCCGCTTGTGCAAGATGTG
AAAATGGAAGTGACCTACGACGAAGCGAAGCAATATATGCTTGACGGGCTGGCGCCGCTTGGCGAGGAATATGTGGCGAT
CATCAAGGAAGGGCTTGAGAACCGTTGGGTCGATGTGCGCGAAAATAGAGGAAAGCGAAGCGGAGCCTATTCATCAGGGG
CGTACGGCACTCATCCGTACATTTTGCTGAACTGGCAAGACAACGTAAACAACTTATTTACGCTCGTACATGAGTTCGGC
CACTCGGTCCATAGCTACTATACGCGCAAAACACAGCCGTATCCGTACGCCCATTATTCGATTTTTGTTGCTGAAGTGGC
ATCAACATGCAATGAGGCGTTGTTGAACGATCATTTGCTGAAAACGATCGACGATGAGAAAAAACGGCTATACTTGCTGA
ACCATTATCTTGAAGGGTTCCGCGGCACCGTCTTCCGGCAGACGATGTTTGCCGAGTTCGAGCATTTGATCCATCTGAAA
GCGCAGGAGGGGGAAGCGCTGACGGCAAAGACGCTCACGTCGCTCTATTATGACTTGAACAAAAAGTATTTCGGCGAGGA
TATGGTGGTTGATGAAGAAATTGGCCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTGTATCAGTACG
CGACCGGCTTCAGCGCAGCGACGGCGCTCAGCAGGCAGATTTTAGAGGAAGGAGAGCCGGCGGTGAAACGGTATATCGAC
TTTTTAAAAGCCGGCAGCTCCGATTATCCGATCGAGGTGCTGAAAAAAGCGGGCGTCGATATGACAAGCGCCGAACCGAT
CCGCCAAGCGTGCCAAGTGTTTGCAGAGAAATTGGAAGAAATGGAACGCCTGCTTGGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9B8F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

97.858

0.491