Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IC803_RS04935 Genome accession   NZ_CP061474
Coordinates   961523..963244 (+) Length   573 a.a.
NCBI ID   WP_081209400.1    Uniprot ID   -
Organism   Geobacillus sp. 46C-IIa     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956523..968244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS04910 (IC803_04910) - 956707..956937 (+) 231 WP_081209408.1 exodeoxyribonuclease VII small subunit -
  IC803_RS04915 (IC803_04915) - 956941..957834 (+) 894 WP_081209406.1 polyprenyl synthetase family protein -
  IC803_RS04920 (IC803_04920) dxs 958100..959992 (+) 1893 WP_081209404.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IC803_RS04925 (IC803_04925) - 959998..960846 (+) 849 WP_081209402.1 TlyA family RNA methyltransferase -
  IC803_RS04930 (IC803_04930) ahrC 960930..961379 (+) 450 WP_020960521.1 transcriptional regulator AhrC/ArgR -
  IC803_RS04935 (IC803_04935) recN 961523..963244 (+) 1722 WP_081209400.1 DNA repair protein RecN Machinery gene
  IC803_RS04940 (IC803_04940) spoIVB 963467..964762 (+) 1296 WP_081209398.1 SpoIVB peptidase -
  IC803_RS04945 (IC803_04945) spo0A 965014..965832 (+) 819 WP_190304268.1 sporulation transcription factor Spo0A -
  IC803_RS04950 (IC803_04950) - 966050..966202 (-) 153 WP_081209391.1 YycC family protein -
  IC803_RS04955 (IC803_04955) - 966310..967038 (+) 729 WP_081209389.1 glycerophosphodiester phosphodiesterase -
  IC803_RS04960 (IC803_04960) - 967049..967297 (-) 249 WP_081209387.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63823.10 Da        Isoelectric Point: 4.9290

>NTDB_id=482559 IC803_RS04935 WP_081209400.1 961523..963244(+) (recN) [Geobacillus sp. 46C-IIa]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDERHPCCQK
CAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTTAVLREIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAETAEAL
ARYRAVYEQHEALAKKLKKLSENEQQMAHRLDLLTFQLREIEQAAIETGEDERLMEEKVRIVNFQKIYEAIQKSYGALAG
EGRGLDSIREAMSHLDDVAALDAALKEAHETVANSYYLLEEVVYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTGDLLIEAKRVTNVRQTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLLIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=482559 IC803_RS04935 WP_081209400.1 961523..963244(+) (recN) [Geobacillus sp. 46C-IIa]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATTATTGAATCGTTATCGTTGTCCTTTGACAAAGGGCTGACAGTGTT
AACCGGCGAAACAGGGGCGGGCAAATCGATCATCATCGACGCGATTCATCTGTTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGACGATGAGCGCCATCCATGTTGCCAAAAA
TGCGCCGAGGTCGGCATCGATGCGAGCGAAGGGATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACGGCCGTCCTGCGCGAAATTGGAGCGACGCTTGTCGATATTCACGGCCAGCATG
AACATCAAGAGCTGATGGATCCGTCCCGCCATTTGCCGCTTCTGGATGAATTCGGCGGCGCGGAGACGGCTGAAGCGCTC
GCACGCTACCGCGCTGTGTATGAACAACATGAAGCGCTGGCGAAAAAGTTGAAAAAGCTGAGTGAAAATGAGCAGCAAAT
GGCGCACCGGCTCGATCTATTGACATTTCAGCTGCGCGAAATCGAACAGGCGGCAATCGAGACGGGAGAAGACGAGCGGC
TGATGGAAGAAAAAGTGCGCATTGTCAATTTTCAAAAGATATATGAAGCCATCCAGAAAAGCTATGGGGCGCTTGCCGGT
GAAGGGCGCGGCCTTGACTCGATCCGAGAGGCGATGAGCCACCTCGATGATGTCGCTGCGCTGGATGCCGCGCTGAAGGA
AGCGCACGAAACGGTCGCCAACAGCTACTACTTGCTTGAAGAAGTGGTGTACAAGCTGCGCGACCAGCTTGAGGAGCTTG
AATACGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCCGAAATTCAGCAGTTAAAACGGAAATACGGTGCAACG
ATCGCTGATATTTTGCAATATGCCGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGCGAGACGCATGTGCATGA
ACTTGAGCGGCAGCTTGCGGCGGTGACGGGGGATTTGCTTATTGAGGCGAAACGGGTGACCAACGTCCGACAGACGTACG
CCCGGGAGTTGATCGAGCGCATTCACCAAGAGTTGAAAGATTTGTACATGGAGAAAACGCAGTTCGACATCATTTTTGCG
AAGCGTGAAGGACCGCTCGATGCCCCGTTAGTCGACGGCGTGCCAGTCAAGTTTCACGAAGATGGCATCGACGTCGTCGA
GTTTTACATTTCGACGAACGTCGGTGAGCCGTTGAAGCCGCTCGCGAAAGTGGCTTCGGGCGGTGAATTGTCACGGATCA
TGCTGGCGTTGAAAACGATTTTTTCCAAACACCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACGGGCGTCAGC
GGCCGCGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCATCTGCC
GCAAGTGGCCGCCATGGCGGACACCCATTTATTGATCGCCAAAGAAACGGACGGAACGCGGACGAAGACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTGAAAGAAATCGGACGGATGATTTCCGGCGTCGAAATGACGGAGCTGACAAAACAGCAC
GCCAAAGAGCTGTTGGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.195

100

0.623