Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | IC804_RS04080 | Genome accession | NZ_CP061473 |
| Coordinates | 809876..810946 (-) | Length | 356 a.a. |
| NCBI ID | WP_035499249.1 | Uniprot ID | - |
| Organism | Geobacillus sp. 47C-IIb | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 804876..815946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC804_RS04040 (IC804_04040) | - | 805708..806502 (+) | 795 | WP_008879844.1 | YqhG family protein | - |
| IC804_RS04045 (IC804_04045) | - | 806579..806758 (-) | 180 | WP_008879845.1 | YqzE family protein | - |
| IC804_RS04050 (IC804_04050) | comGG | 806804..807193 (-) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| IC804_RS04055 (IC804_04055) | comGF | 807328..807771 (-) | 444 | WP_008879847.1 | competence type IV pilus minor pilin ComGF | - |
| IC804_RS04060 (IC804_04060) | - | 807750..808076 (-) | 327 | WP_081157230.1 | competence protein ComG | - |
| IC804_RS04065 (IC804_04065) | comGD | 808060..808497 (-) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| IC804_RS04070 (IC804_04070) | comGC | 808487..808783 (-) | 297 | WP_008879850.1 | competence type IV pilus major pilin ComGC | - |
| IC804_RS04075 (IC804_04075) | comGB | 808851..809879 (-) | 1029 | WP_081157231.1 | competence type IV pilus assembly protein ComGB | - |
| IC804_RS04080 (IC804_04080) | comGA | 809876..810946 (-) | 1071 | WP_035499249.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| IC804_RS04085 (IC804_04085) | - | 811146..811844 (+) | 699 | WP_011887803.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IC804_RS04090 (IC804_04090) | - | 812008..812250 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| IC804_RS04095 (IC804_04095) | - | 812281..813408 (-) | 1128 | WP_081157232.1 | class I SAM-dependent methyltransferase | - |
| IC804_RS04100 (IC804_04100) | - | 813640..814272 (-) | 633 | WP_041264569.1 | MBL fold metallo-hydrolase | - |
| IC804_RS04105 (IC804_04105) | - | 814452..814628 (+) | 177 | WP_008879857.1 | DUF2759 domain-containing protein | - |
| IC804_RS04110 (IC804_04110) | - | 814664..815827 (-) | 1164 | WP_011887806.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39561.71 Da Isoelectric Point: 8.6314
>NTDB_id=482501 IC804_RS04080 WP_035499249.1 809876..810946(-) (comGA) [Geobacillus sp. 47C-IIb]
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALLDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALLDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
Nucleotide
Download Length: 1071 bp
>NTDB_id=482501 IC804_RS04080 WP_035499249.1 809876..810946(-) (comGA) [Geobacillus sp. 47C-IIb]
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGTATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGCTGCTTTACGGCTCAGCGCTCCTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGCCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGTATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGCTGCTTTACGGCTCAGCGCTCCTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGCCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
50.997 |
98.596 |
0.503 |
| pilB | Glaesserella parasuis strain SC1401 |
37.719 |
96.067 |
0.362 |