Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IC805_RS17795 Genome accession   NZ_CP061472
Coordinates   3515693..3517414 (+) Length   573 a.a.
NCBI ID   WP_011231871.1    Uniprot ID   Q75TB4
Organism   Geobacillus thermoleovorans strain SURF-48B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3510693..3522414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC805_RS17770 (IC805_17765) - 3510940..3511170 (+) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -
  IC805_RS17775 (IC805_17770) - 3511174..3512067 (+) 894 WP_014196322.1 polyprenyl synthetase family protein -
  IC805_RS17780 (IC805_17775) dxs 3512316..3514208 (+) 1893 WP_014196321.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IC805_RS17785 (IC805_17780) - 3514212..3515060 (+) 849 WP_011231873.1 TlyA family RNA methyltransferase -
  IC805_RS17790 (IC805_17785) ahrC 3515117..3515566 (+) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  IC805_RS17795 (IC805_17790) recN 3515693..3517414 (+) 1722 WP_011231871.1 DNA repair protein RecN Machinery gene
  IC805_RS17800 (IC805_17795) spoIVB 3517688..3518983 (+) 1296 WP_011231870.1 SpoIVB peptidase -
  IC805_RS17805 (IC805_17800) spo0A 3519368..3520186 (+) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  IC805_RS17810 (IC805_17805) - 3520348..3521223 (+) 876 WP_014196318.1 tyrosine-type recombinase/integrase -
  IC805_RS17815 (IC805_17810) - 3521415..3522215 (-) 801 WP_011229854.1 ExeA family protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64295.59 Da        Isoelectric Point: 4.9678

>NTDB_id=482493 IC805_RS17795 WP_011231871.1 3515693..3517414(+) (recN) [Geobacillus thermoleovorans strain SURF-48B]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=482493 IC805_RS17795 WP_011231871.1 3515693..3517414(+) (recN) [Geobacillus thermoleovorans strain SURF-48B]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTTGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGGCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AATACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTCACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCTCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGATGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCAATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q75TB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.618