Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IC805_RS07290 Genome accession   NZ_CP061472
Coordinates   1423265..1425088 (-) Length   607 a.a.
NCBI ID   WP_025038851.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain SURF-48B     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418265..1430088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC805_RS07255 (IC805_07255) - 1418724..1419362 (-) 639 WP_011230330.1 GTP pyrophosphokinase family protein -
  IC805_RS07260 (IC805_07260) - 1419500..1419877 (-) 378 WP_011230329.1 hypothetical protein -
  IC805_RS07265 (IC805_07265) - 1420013..1420606 (+) 594 WP_011230328.1 CYTH domain-containing protein -
  IC805_RS07270 (IC805_07270) - 1420603..1421226 (+) 624 WP_011230327.1 lytic transglycosylase domain-containing protein -
  IC805_RS07275 (IC805_07275) - 1421329..1421742 (+) 414 WP_011230326.1 hypothetical protein -
  IC805_RS07280 (IC805_07280) spxH 1421735..1422628 (+) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  IC805_RS07285 (IC805_07285) - 1423054..1423251 (+) 198 WP_011230324.1 hypothetical protein -
  IC805_RS07290 (IC805_07290) pepF 1423265..1425088 (-) 1824 WP_025038851.1 oligoendopeptidase F Regulator
  IC805_RS07295 (IC805_07295) - 1425088..1426416 (-) 1329 WP_011230322.1 competence protein CoiA -
  IC805_RS07300 (IC805_07300) cls 1426605..1428113 (-) 1509 WP_011230321.1 cardiolipin synthase -
  IC805_RS07305 (IC805_07305) mecA 1428210..1428890 (-) 681 WP_011230320.1 adaptor protein MecA -
  IC805_RS07310 (IC805_07310) - 1429101..1429760 (+) 660 WP_014195176.1 TerC family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70300.44 Da        Isoelectric Point: 4.9959

>NTDB_id=482456 IC805_RS07290 WP_025038851.1 1423265..1425088(-) (pepF) [Geobacillus thermoleovorans strain SURF-48B]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NMLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIAAIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLSALYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=482456 IC805_RS07290 WP_025038851.1 1423265..1425088(-) (pepF) [Geobacillus thermoleovorans strain SURF-48B]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCAGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATATGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGAGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAATCTAATCGCCGCGATTCACGAACATTTGCCGCTGTTGCATCGGT
ACGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGATTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCATATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTACTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAAGCGTTGACGGCCGAAACGTTGAGCGCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTACGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTCAGTAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGTTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAACGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

97.694

0.499