Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   J7T77_RS08800 Genome accession   NZ_CP072430
Coordinates   1694026..1694319 (-) Length   97 a.a.
NCBI ID   WP_082309154.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24746     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689026..1699319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T77_RS08765 (J7T77_08645) - 1689430..1689873 (-) 444 WP_084829882.1 CAAX protease -
  J7T77_RS08770 - 1689947..1690372 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  J7T77_RS08775 (J7T77_08655) - 1690614..1690811 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7T77_RS08780 (J7T77_08660) - 1691060..1692253 (-) 1194 WP_084831204.1 acetate kinase -
  J7T77_RS08785 (J7T77_08665) comGH 1692309..1693265 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  J7T77_RS08790 (J7T77_08670) comGG 1693310..1693627 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7T77_RS08795 (J7T77_08675) comGF 1693605..1694042 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T77_RS08800 (J7T77_08680) comGE 1694026..1694319 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7T77_RS08805 (J7T77_08685) comGD 1694291..1694719 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T77_RS08810 (J7T77_08690) comGC 1694679..1695005 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T77_RS08815 (J7T77_08695) comGB 1695002..1696102 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7T77_RS08820 (J7T77_08700) comGA/cglA/cilD 1695984..1696925 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T77_RS08825 (J7T77_08705) - 1697006..1697368 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10860.74 Da        Isoelectric Point: 10.4561

>NTDB_id=482422 J7T77_RS08800 WP_082309154.1 1694026..1694319(-) (comGE) [Streptococcus thermophilus strain S24746]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMSDNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=482422 J7T77_RS08800 WP_082309154.1 1694026..1694319(-) (comGE) [Streptococcus thermophilus strain S24746]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGTCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423