Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IC806_RS00325 Genome accession   NZ_CP061471
Coordinates   72482..73429 (+) Length   315 a.a.
NCBI ID   WP_013145615.1    Uniprot ID   -
Organism   Geobacillus zalihae strain SURF-114     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67482..78429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC806_RS00310 (IC806_00310) kdgD 68455..69417 (+) 963 WP_020755078.1 5-dehydro-4-deoxyglucarate dehydratase -
  IC806_RS00315 (IC806_00315) gucD 69602..71068 (+) 1467 WP_190305198.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  IC806_RS18885 - 71302..71358 (+) 57 Protein_79 hypothetical protein -
  IC806_RS18605 - 71429..71785 (+) 357 WP_263364190.1 Uma2 family endonuclease -
  IC806_RS00325 (IC806_00325) ceuB 72482..73429 (+) 948 WP_013145615.1 ABC transporter permease Machinery gene
  IC806_RS00330 (IC806_00330) - 73422..74372 (+) 951 WP_081132485.1 iron chelate uptake ABC transporter family permease subunit -
  IC806_RS00335 (IC806_00335) - 74366..75121 (+) 756 WP_015374606.1 ABC transporter ATP-binding protein -
  IC806_RS00340 (IC806_00340) - 75790..76749 (+) 960 WP_081132486.1 siderophore ABC transporter substrate-binding protein -
  IC806_RS00345 (IC806_00345) - 76788..77432 (-) 645 WP_190305199.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34572.48 Da        Isoelectric Point: 9.4681

>NTDB_id=482404 IC806_RS00325 WP_013145615.1 72482..73429(+) (ceuB) [Geobacillus zalihae strain SURF-114]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFAGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAIFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGVFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=482404 IC806_RS00325 WP_013145615.1 72482..73429(+) (ceuB) [Geobacillus zalihae strain SURF-114]
ATGAAAAAATGGATGGTGCTTCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGGGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGAGGCTCATCAGCATTCTGATCGCCG
GGTCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTTGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGCGGGGACGCTGCTGTTTATGACGGTTTTGGATCGTGTGAAGTACAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCTGTCACGACGTTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGACGTTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACCGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATCGTCACGATGTATTATGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
ATTTGGCGCTTTGTTTGTGCTGATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCGATCGGCTTGA
CGGTTGGAGTAATCGGAAGCGGTGTCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483