Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IC807_RS17735 Genome accession   NZ_CP061470
Coordinates   3525322..3527145 (+) Length   607 a.a.
NCBI ID   WP_033004671.1    Uniprot ID   A0A7H1S054
Organism   Geobacillus zalihae strain SURF-189     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520322..3532145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC807_RS17715 (IC807_17715) - 3520652..3521311 (-) 660 WP_020753709.1 TerC family protein -
  IC807_RS17720 (IC807_17720) mecA 3521522..3522202 (+) 681 WP_020753707.1 adaptor protein MecA -
  IC807_RS17725 (IC807_17725) cls 3522299..3523807 (+) 1509 WP_079936398.1 cardiolipin synthase -
  IC807_RS17730 (IC807_17730) - 3523994..3525322 (+) 1329 WP_033004673.1 competence protein CoiA -
  IC807_RS17735 (IC807_17735) pepF 3525322..3527145 (+) 1824 WP_033004671.1 oligoendopeptidase F Regulator
  IC807_RS17740 (IC807_17740) - 3527159..3527356 (-) 198 WP_013523175.1 hypothetical protein -
  IC807_RS17745 (IC807_17745) spxH 3527782..3528675 (-) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  IC807_RS17750 (IC807_17750) - 3528668..3529081 (-) 414 WP_011230326.1 hypothetical protein -
  IC807_RS17755 (IC807_17755) - 3529184..3529807 (-) 624 WP_011230327.1 lytic transglycosylase domain-containing protein -
  IC807_RS17760 (IC807_17760) - 3529804..3530397 (-) 594 WP_011230328.1 CYTH domain-containing protein -
  IC807_RS17765 (IC807_17765) - 3530533..3530910 (+) 378 WP_011230329.1 hypothetical protein -
  IC807_RS17770 (IC807_17770) - 3531040..3531678 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70263.40 Da        Isoelectric Point: 4.9464

>NTDB_id=482403 IC807_RS17735 WP_033004671.1 3525322..3527145(+) (pepF) [Geobacillus zalihae strain SURF-189]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAINEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYSSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAEMLTALYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAAIALSKQILEEGEPAVTRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=482403 IC807_RS17735 WP_033004671.1 3525322..3527145(+) (pepF) [Geobacillus zalihae strain SURF-189]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTTGAGGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCAATGATTCCGAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGTTGTATGAAGCATTGCAATACCAAGATGAAGTGTCGATGCGCCTAGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCAATGAAGCGGTGTTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAGATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAAGAAGCGATATTGGCGCAGGCGGCCGAAGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGACGAAAACGGCGAGGAAGTCGAAGTAACGCATGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAACACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACAGCTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACTTGATCGCCACGATTCACGAACATTTGCCGCTGTTGCACCGGT
ACGTACGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGACTTGTACACGCCGCTTGTCCAAGATGTG
AAAATGGAAGTGACGTACGACGAAGCGAAGCAATATATGCTTGAAGGGCTAGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAACGAAGCGGCGCCTATTCGTCGGGAG
CATACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATCTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTATTTGCTGAAAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCTGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGTGAAGCGTTGACGGCCGAAATGTTGACTGCTCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTATGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGATTGCACTCAGCAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGACACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGCTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCCGAAAAGCTGGAAGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1S054

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

97.694

0.498