Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IC807_RS02925 Genome accession   NZ_CP061470
Coordinates   581462..582409 (+) Length   315 a.a.
NCBI ID   WP_013145615.1    Uniprot ID   -
Organism   Geobacillus zalihae strain SURF-189     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 576462..587409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC807_RS02910 (IC807_02910) - 577679..578968 (+) 1290 WP_015374601.1 CitMHS family transporter -
  IC807_RS02915 (IC807_02915) - 579012..580322 (+) 1311 WP_015374602.1 acyclic terpene utilization AtuA family protein -
  IC807_RS02920 (IC807_02920) - 580328..580651 (+) 324 WP_015374603.1 hypothetical protein -
  IC807_RS02925 (IC807_02925) ceuB 581462..582409 (+) 948 WP_013145615.1 ABC transporter permease Machinery gene
  IC807_RS02930 (IC807_02930) - 582402..583352 (+) 951 WP_020755069.1 iron chelate uptake ABC transporter family permease subunit -
  IC807_RS02935 (IC807_02935) - 583346..584101 (+) 756 WP_020755068.1 ABC transporter ATP-binding protein -
  IC807_RS02940 (IC807_02940) - 584360..585319 (+) 960 WP_044745224.1 siderophore ABC transporter substrate-binding protein -
  IC807_RS02945 (IC807_02945) - 585358..586044 (-) 687 WP_190300168.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34572.48 Da        Isoelectric Point: 9.4681

>NTDB_id=482364 IC807_RS02925 WP_013145615.1 581462..582409(+) (ceuB) [Geobacillus zalihae strain SURF-189]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFAGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAIFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGVFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=482364 IC807_RS02925 WP_013145615.1 581462..582409(+) (ceuB) [Geobacillus zalihae strain SURF-189]
ATGAAAAAATGGATGGTGCTCCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGTGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGAGGCTCATCAGCATTCTGATCGCCG
GGTCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTTGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGCGGGGACGCTGCTGTTTATGACGGTTTTGGATCGTGTGAAGTATAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCTGTCACGACGTTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGACGTTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACTGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATCGTCACGATGTATTATGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
ATTTGGCGCTTTGTTTGTGCTGATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCGATCGGCTTGA
CGGTTGGAGTAATCGGAAGCGGTGTCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483