Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J7T77_RS01290 Genome accession   NZ_CP072430
Coordinates   235581..236177 (-) Length   198 a.a.
NCBI ID   WP_024009722.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24746     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 230581..241177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T77_RS01275 (J7T77_01265) - 231250..231690 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  J7T77_RS01280 (J7T77_01270) pepC 231792..233129 (+) 1338 WP_014607929.1 aminopeptidase C -
  J7T77_RS01285 (J7T77_01275) pbp1a 233239..235581 (-) 2343 WP_372589691.1 penicillin-binding protein PBP1A -
  J7T77_RS01290 (J7T77_01280) recU 235581..236177 (-) 597 WP_024009722.1 Holliday junction resolvase RecU Machinery gene
  J7T77_RS01295 (J7T77_01285) - 236254..236769 (+) 516 WP_024009723.1 DUF1273 domain-containing protein -
  J7T77_RS01300 (J7T77_01290) gpsB 236878..237210 (+) 333 WP_095559223.1 cell division regulator GpsB -
  J7T77_RS01310 (J7T77_01300) - 237743..238909 (+) 1167 WP_014607933.1 class I SAM-dependent RNA methyltransferase -
  J7T77_RS01315 (J7T77_01305) - 238912..240774 (+) 1863 WP_014607934.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22783.32 Da        Isoelectric Point: 10.1109

>NTDB_id=482343 J7T77_RS01290 WP_024009722.1 235581..236177(-) (recU) [Streptococcus thermophilus strain S24746]
MVNYPHQISRKIAQVSTKKSNRVDFANRGMNFESAINATNNYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHPHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=482343 J7T77_RS01290 WP_024009722.1 235581..236177(-) (recU) [Streptococcus thermophilus strain S24746]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTAAGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATCAATGCGACTAATAATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCTGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATCCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTTCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAGTCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505