Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   J7T92_RS08175 Genome accession   NZ_CP072429
Coordinates   1562602..1566255 (-) Length   1217 a.a.
NCBI ID   WP_260222891.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24747     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1557602..1571255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T92_RS08155 (J7T92_08140) proB 1557955..1558758 (-) 804 WP_014608676.1 glutamate 5-kinase -
  J7T92_RS08160 (J7T92_08145) - 1558879..1560468 (-) 1590 WP_014608677.1 ABC transporter permease -
  J7T92_RS08165 (J7T92_08150) - 1560471..1561202 (-) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  J7T92_RS08170 (J7T92_08155) - 1561477..1562208 (+) 732 WP_260222892.1 DUF554 domain-containing protein -
  J7T92_RS08175 (J7T92_08160) rexA 1562602..1566255 (-) 3654 WP_260222891.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  J7T92_RS08180 (J7T92_08165) rexB 1566245..1569565 (-) 3321 WP_372429374.1 ATP-dependent nuclease subunit B Machinery gene
  J7T92_RS08185 (J7T92_08170) - 1569940..1571196 (+) 1257 WP_011681055.1 ISL3-like element ISSth1 family transposase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138404.56 Da        Isoelectric Point: 4.7616

>NTDB_id=482306 J7T92_RS08175 WP_260222891.1 1562602..1566255(-) (rexA) [Streptococcus thermophilus strain S24747]
MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTKHLGQAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLRQNLLKGQIEAKPEQAKNELLD
GLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTILEVLTKHNDDILPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEE
NPEVAVSYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPNRNTYLDLMVSFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGLHPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIY
NDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKETLTQQYGTNVENNRLPVAIRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAI
GQVEVKAAVDADDLSNNRQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTLYEPIMDTEGVDIMDKKEGVQPL
ETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVTLQDLTQALSRVSAFDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTRPSELKTRYQGQMSLYAKALSQAYQMEKV
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=482306 J7T92_RS08175 WP_260222891.1 1562602..1566255(-) (rexA) [Streptococcus thermophilus strain S24747]
ATGTTGACTAAAGCTTTTTTAAGTCCAGCAGAGATTGAGGAACGTATTGCCCAAGAAGCAGCTTCTGACAAGGATCGCAA
GTTAACACCAGAACAGATTGAAGCTATTTACAGTAATGGTACTAATATTTTGGTATCTGCCTCAGCTGGTTCAGGGAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGATCAACTCTTTATCTCAACCTTTACG
GTAAAAGCTGCAGGTGAGTTAAAGGAGCGTCTGGAAAAGCGGCTGACAAAGCATTTAGGACAGGCAGAGACGGATGAGGA
GCGGGCATTTCTTTCAGACCAGATTGCCAAGATTGGGACGGCTGATATTGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTACTTTCCGTATCATGACAGACCTTGCTGAGCAGACGCTTATGAAA
AATGAGGTTTATGCTGATCTCTTCAATGATTACATGCAAGGAAAGGATGCCCAACTTTTTCAAAAATTGGTCCGTAATTT
CACTGGACATAGCAAAACTAGCAAGGCTTTTCGTGATTTAGTTTACGATATTTACAGCTTTTCTCAGGCTACTGCAGATC
CTGAAAAATGGCTACGTCAAAATCTCTTGAAAGGACAGATCGAGGCTAAGCCAGAACAGGCTAAAAATGAGCTTTTAGAC
GGTCTTAAAGATGGCTTGTTGGCTGATTTCCTAGCTTTCTTAAGAGACCATTTAGGTATAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTATCCTTCTTGAGGGCTCCTTGATTAATGACCAAACTGATATGGAGG
ACCTCCTCAAACAACTATTGACTCTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCATACAACAAGACCAAAAATGAGTTTGTGGCTCAGTTGCGAGAGGTCGATACTCAGCTCACCATTCT
GGAGGTTTTGACCAAGCATAATGATGATATCCTACCTATGTTGGAGCTACTTCAGTCCTTTGTACTTGATTTTTCGGATC
AGTATTTACAGGCAAAGATTCAGGAAAATACCTTTGAATTCTCGGATATTGCCCACTTTGCTATCCGTATTTTGGAAGAA
AATCCAGAGGTAGCAGTCAGCTACCGTGACCGTTACCATGAAGTTATGGTGGATGAGTATCAGGACAATAGCCATACTCA
AGAACGAATGTTGGAACTTCTATCTAACGGCCATAACCGATTCATGGTGGGAGATATCAAGCAGTCCATTTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGTAAGTTTCAGCTTTTCCTTGAAAATCCTGATGCAGGTAAGCTGATTCTCCTT
AAGGAGAACTTTCGTAGTCAATCTGAAGTCCTTGATGCGACAAATGGTGTTTTTAGCCACCTCATGGATCAGGAAATCGG
GGACATCCTATATGACAAGACTCATATGTTGGTAGCAGGTAGTCAGAAGCAAAAAGAGCCCCATCCTGAAAATGAAACTG
AGGTTCTGATTTATAATAGTGATGAATCTAGTACGAGTGAGGATGAAGAAGGTCCTGATCAAGCTATCAGCAGCGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAAACTTCATGAGCAGGGTGTACGTTTTGAGGACATCACCCTCCTAGCACCGAA
CCGTAACACCTATCTGGACTTGATGGTAAGTTTCGAGGAACACGGGATTCCCTTGGTTCCTGACGAGTATAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGACACCCTTCGTGCTATCAATAATCCTCTTAACGATTATGCTCTCGTT
GCTCTCCTTCGTTCACCTATGTTTAACTTCAACGAGGATGACCTGACTCGTATCGCAGTTCAGGCTGACAAAGGCCAATT
CTATGATAAGCTTCTTGCAGCTCATACCAAATCAGGCCTTCATCCGGAAGTTGTGATGCAAGGACTTGATGCCAAGTTGA
CTCTCTTCACAGAGACTCTGGCAGATTGGCGTGACTACAGTAAGTGTCATTCGATTTATGACCTCATTTGGAAGATTTAC
AACGACCGTTTCTATTATGATTACGTCGGAGGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTTTATGCCCTTGCCTT
GCGTGCTAATGCTTATGAAAAGACAGGATTTAAGGGGCTTTCTCGTTTTATTGGCATGATTGATAAGATTATTGCTAGCG
GTAACGACCTAGAGGAAGTGACAGATTTGGTTCCCAAAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGGCTA
GAGTTCAAGTATGTCTTTGTCCTGCAGATGAATCGCAAGTTCATTGGTCACAGCAAGGATGGCCTGAGCGGTAAGTATAT
TATCAATCGTGAAAAAGGGCTTGGTATTAAGTATCTAGCTGACCTCAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTTGAGACCTTGACCTTCCAGGAAAATCGTAGGGAAGAGCGCAGGGCAAGTATTTCAGAAGAGATGCGTCTA
CTCTATGTGGCAATGACACGTGCAGAGAAGAAACTCTACCTAGTTGGTAAGGGAAGTAAGGAAACCTTAACCCAGCAGTA
TGGCACTAATGTCGAAAATAATCGCCTACCAGTGGCTATACGTGACCAGATTGCTACTTATCAGGATTGGATTATGGCAC
TTGATACTGCTTTTATGAGAAAGGACCTCAAGTTTACTGTTCGCTTTGTTGAGGATGAGGAGTTGACGCCAGAGGCTATT
GGACAGGTTGAAGTCAAGGCAGCAGTAGATGCCGATGATTTATCTAACAATCGTCAGACGGAGGAGATTGAGCGTGCCTT
GACTGTCTTAGAAAGTGTTGAAAAACTCAACCACCTTTATGCACCAGCGATTGACCTACCTTCTGTGCGTACCCCAAGCC
AGCTCAAGACCCTTTACGAACCAATTATGGATACAGAGGGCGTAGATATCATGGATAAGAAAGAGGGAGTGCAACCTCTT
GAGACGGCTAGCACTTTTGAGCTACCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCAACCCA
TGAACTCATGCAACGCTTGACTCTTTCTGATACAGTGACTCTCCAAGATTTGACTCAGGCACTGAGTCGGGTATCGGCAT
TTGATCAAGTCAAGGCGCGTGTTCAGTTAGAAAAACTTTTAGGCTTCTTTGATACAGAGCTCGGGAAGCTTATTTTGGCC
AACCGTGATAAGTTGCGTCGTGAAGCACCTTTTGCCATGTTGGCAGAAGACCCAGCTAGTAAAGAAGACTTTGTTGTTCG
TGGAATCATTGATGGCTATCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTACAAGACCGACCACTTCACTCGTCCTA
GTGAGCTTAAGACGCGCTACCAAGGGCAAATGAGCCTCTATGCTAAAGCGCTTAGCCAAGCCTATCAAATGGAAAAGGTC
GACAAATATCTTATCCTCTTGGGTGGAAAGGACTTAGAAGTTGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.531

100

0.509