Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ICI41_RS24215 Genome accession   NZ_CP061376
Coordinates   5201894..5202451 (+) Length   185 a.a.
NCBI ID   WP_016253895.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HS17-127     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5196894..5207451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICI41_RS24195 (ICI41_24190) pilR 5198170..5199507 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  ICI41_RS24200 (ICI41_24195) thiO 5199553..5200647 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  ICI41_RS24205 (ICI41_24200) - 5200782..5201291 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  ICI41_RS24210 (ICI41_24205) - 5201397..5201903 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  ICI41_RS24215 (ICI41_24210) pilV 5201894..5202451 (+) 558 WP_016253895.1 type 4a pilus minor pilin PilV Machinery gene
  ICI41_RS24220 (ICI41_24215) pilW 5202448..5203272 (+) 825 WP_016253896.1 type 4a pilus minor pilin PilW -
  ICI41_RS24225 (ICI41_24220) pilX 5203269..5203856 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  ICI41_RS24230 (ICI41_24225) pilY1 5203868..5207359 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20064.17 Da        Isoelectric Point: 7.9350

>NTDB_id=482190 ICI41_RS24215 WP_016253895.1 5201894..5202451(+) (pilV) [Pseudomonas aeruginosa strain HS17-127]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=482190 ICI41_RS24215 WP_016253895.1 5201894..5202451(+) (pilV) [Pseudomonas aeruginosa strain HS17-127]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

100

100

1