Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LMO4A_RS01380 Genome accession   NC_017529
Coordinates   272494..273867 (+) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes L99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 267494..278867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMO4A_RS01360 (lmo4a_0245) - 267848..268306 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  LMO4A_RS01365 (lmo4a_0246) - 268319..268837 (+) 519 WP_012582077.1 UvrB/UvrC motif-containing protein -
  LMO4A_RS01370 (lmo4a_0247) - 268834..269856 (+) 1023 WP_012582076.1 protein arginine kinase -
  LMO4A_RS01375 (lmo4a_0248) - 269885..272347 (+) 2463 WP_003729198.1 ATP-dependent Clp protease ATP-binding subunit -
  LMO4A_RS01380 (lmo4a_0249) radA 272494..273867 (+) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  LMO4A_RS01385 (lmo4a_0250) - 274001..275074 (+) 1074 WP_003737958.1 PIN/TRAM domain-containing protein -
  LMO4A_RS01390 (lmo4a_0251) ispD 275094..275792 (+) 699 WP_012582075.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LMO4A_RS01395 (lmo4a_0252) ispF 275785..276258 (+) 474 WP_003740385.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LMO4A_RS01400 (lmo4a_0253) gltX 276277..277752 (+) 1476 WP_003729193.1 glutamate--tRNA ligase -
  LMO4A_RS01405 (lmo4a_0254) epsC 278152..278766 (+) 615 WP_003732828.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=48198 LMO4A_RS01380 WP_003729197.1 272494..273867(+) (radA) [Listeria monocytogenes L99]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=48198 LMO4A_RS01380 WP_003729197.1 272494..273867(+) (radA) [Listeria monocytogenes L99]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGAG
AGCCTTCGAAAGCGACTCCGATTACCCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGTGGAGGTGTGGTTCCAGGGTCTATGGTACTTGTCGGCGGGGACCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTTACGAGTGCAGC
AGGTAGTGTTTCGCAAGTGAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCAATCTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGCCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATTTTTGA
AATGCGAGATGTTGGACTAGTTGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAACCAAGACGCTTACTTGAAAGCAGCGGGCGGGGTTAAGCTAGATGAACCTGCAGTAGATTTGGCGGTTG
CAGTGAGTGTGGCGTCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGTTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTGCAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643

Multiple sequence alignment