Detailed information NTG0481937

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6247_RS19955
• Genome accession: NZ_CP072322
• Coordinates: 4176976..4177968 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC-JS426
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4171976..4182968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6247_RS19925 (J6247_19920)	ispD	4172037..4172747 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6247_RS19930 (J6247_19925)	ispF	4172747..4173226 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6247_RS19935 (J6247_19930)	truD	4173223..4174272 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J6247_RS19940 (J6247_19935)	surE	4174253..4175014 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J6247_RS19945 (J6247_19940)	pcm	4175008..4175634 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J6247_RS19950 (J6247_19945)	nlpD	4175819..4176913 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J6247_RS19955 (J6247_19950)	rpoS	4176976..4177968 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J6247_RS19960 (J6247_19955)	-	4178089..4178496 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
J6247_RS19965 (J6247_19960)	-	4178643..4179236 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
J6247_RS19970 (J6247_19965)	-	4179236..4180662 (+)	1427	Protein_3939	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
J6247_RS19975 (J6247_19970)	-	4180673..4180909 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
J6247_RS19980 (J6247_19975)	ygbN	4180948..4182312 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=481937 J6247_RS19955 WP_000081550.1 4176976..4177968(+) (rpoS) [Escherichia coli strain EC-JS426]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=481937 J6247_RS19955 WP_000081550.1 4176976..4177968(+) (rpoS) [Escherichia coli strain EC-JS426]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715