Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICJ54_RS23435 Genome accession   NZ_CP061335
Coordinates   5157071..5158441 (-) Length   456 a.a.
NCBI ID   WP_015271795.1    Uniprot ID   A0A2N5BBJ6
Organism   Pseudomonas asiatica strain C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5152071..5163441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ54_RS23415 (ICJ54_23415) - 5152298..5152495 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  ICJ54_RS23420 (ICJ54_23420) - 5152509..5154574 (-) 2066 Protein_4638 carbon starvation CstA family protein -
  ICJ54_RS23425 (ICJ54_23425) - 5154753..5155115 (+) 363 WP_013974212.1 PilZ domain-containing protein -
  ICJ54_RS23430 (ICJ54_23430) - 5155379..5156895 (+) 1517 Protein_4640 nucleobase:cation symporter-2 family protein -
  ICJ54_RS23435 (ICJ54_23435) radA 5157071..5158441 (-) 1371 WP_015271795.1 DNA repair protein RadA Machinery gene
  ICJ54_RS23440 (ICJ54_23440) mscL 5158619..5159038 (+) 420 WP_137162411.1 large-conductance mechanosensitive channel protein MscL -
  ICJ54_RS23445 (ICJ54_23445) - 5159173..5159949 (-) 777 WP_015271797.1 ferredoxin--NADP reductase -
  ICJ54_RS23450 (ICJ54_23450) - 5160162..5160869 (+) 708 WP_054572788.1 autoinducer binding domain-containing protein -
  ICJ54_RS23455 (ICJ54_23455) - 5160966..5162090 (+) 1125 WP_015271799.1 methyltransferase -
  ICJ54_RS23460 (ICJ54_23460) - 5162410..5162565 (-) 156 WP_013974218.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48755.20 Da        Isoelectric Point: 6.8985

>NTDB_id=481913 ICJ54_RS23435 WP_015271795.1 5157071..5158441(-) (radA) [Pseudomonas asiatica strain C1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSTGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=481913 ICJ54_RS23435 WP_015271795.1 5157071..5158441(-) (radA) [Pseudomonas asiatica strain C1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGTACCGGCCGTGCCGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGCAAATCGAC
CATCCTGCTGCAGACCTTGTGCAACATTGCCGTGGGCATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATC
GCCACGGCTCGCGTCGAAAAACCGCGGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCCGGCGGCGTGGCCCAGGTGCGCGAAAGCACGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGTACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTCGAGCACATGGTCGACACCGTGCTGTATTTC
GAGGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCAGTCAAGAACCGCTTTGGCGCAGTCAACGAGCTGGGTGTGTT
CGGCATGACCGACCGGGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGGGTGACCTTGGGCCTTGACCAGAATCGCCTGGCAATGTTGCTGGCGGTGCTGCACCGCCACGGCGG
TATTCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTGAAGGTGCTGGAAACCGCTTCTGACCTGGCGT
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCCTGGCCCATGGCCTGCTGGTGTTTGGCGAGATCGGCCTGTCT
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGTTTGAAGGAGGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCCCCGAAAGAGGCTCCGGCCGGGTTGCAGGTGATTGCCGTTACCCGGCTGGAGCAGGCTCTGGATGCGT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5BBJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461