Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ICJ54_RS09280 Genome accession   NZ_CP061335
Coordinates   2030774..2031409 (+) Length   211 a.a.
NCBI ID   WP_015269400.1    Uniprot ID   A0A2N5B7G8
Organism   Pseudomonas asiatica strain C1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2025774..2036409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ54_RS09260 (ICJ54_09260) - 2025780..2026712 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  ICJ54_RS09265 (ICJ54_09265) - 2026709..2027488 (+) 780 WP_015269397.1 ABC transporter permease -
  ICJ54_RS09270 (ICJ54_09270) - 2027498..2028004 (-) 507 Protein_1828 DUF2062 domain-containing protein -
  ICJ54_RS09275 (ICJ54_09275) comA 2028147..2030360 (+) 2214 WP_189121685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ICJ54_RS09280 (ICJ54_09280) exbB 2030774..2031409 (+) 636 WP_015269400.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ICJ54_RS09285 (ICJ54_09285) - 2031406..2031840 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  ICJ54_RS09290 (ICJ54_09290) lpxK 2031840..2032841 (+) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  ICJ54_RS09295 (ICJ54_09295) - 2032886..2033071 (+) 186 WP_011532874.1 Trm112 family protein -
  ICJ54_RS09300 (ICJ54_09300) kdsB 2033068..2033832 (+) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ICJ54_RS09305 (ICJ54_09305) - 2033832..2034296 (+) 465 WP_015269403.1 low molecular weight protein-tyrosine-phosphatase -
  ICJ54_RS09310 (ICJ54_09310) murB 2034293..2035312 (+) 1020 WP_189121686.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22888.17 Da        Isoelectric Point: 7.3616

>NTDB_id=481908 ICJ54_RS09280 WP_015269400.1 2030774..2031409(+) (exbB) [Pseudomonas asiatica strain C1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=481908 ICJ54_RS09280 WP_015269400.1 2030774..2031409(+) (exbB) [Pseudomonas asiatica strain C1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5B7G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.381

99.526

0.82