Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J6247_RS00585 Genome accession   NZ_CP072322
Coordinates   123425..124852 (-) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain EC-JS426     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118425..129852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6247_RS00555 (J6247_00555) yeeZ 118480..119304 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  J6247_RS00560 (J6247_00560) yeeY 119350..120279 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J6247_RS00565 (J6247_00565) yoeI 120494..120556 (+) 63 WP_010723108.1 membrane protein YoeI -
  J6247_RS00570 (J6247_00570) plaP 120546..121904 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J6247_RS00575 (J6247_00575) tsuA 122083..123141 (+) 1059 WP_023140560.1 thiosulfate utilization transporter TsuA/YeeE -
  J6247_RS00580 (J6247_00580) tsuB 123155..123382 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J6247_RS00585 (J6247_00585) sbcB 123425..124852 (-) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  J6247_RS00590 (J6247_00590) dacD 125061..126227 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J6247_RS00595 (J6247_00595) sbmC 126346..126819 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  J6247_RS00600 (J6247_00600) yeeA 127017..128075 (+) 1059 WP_001200891.1 FUSC family protein -
  J6247_RS00605 (J6247_00605) tmaR 128247..128576 (+) 330 WP_000450409.1 DUF496 family protein -
  J6247_RS00610 (J6247_00610) - 128677..128859 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J6247_RS00615 (J6247_00615) - 128931..129059 (+) 129 Protein_124 transposase domain-containing protein -
  J6247_RS00620 (J6247_00620) - 129348..129428 (-) 81 Protein_125 hypothetical protein -
  J6247_RS00625 (J6247_00625) yeeW 129474..129668 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=481869 J6247_RS00585 WP_000980582.1 123425..124852(-) (sbcB) [Escherichia coli strain EC-JS426]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=481869 J6247_RS00585 WP_000980582.1 123425..124852(-) (sbcB) [Escherichia coli strain EC-JS426]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581