Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AT6N2_RS05140 Genome accession   NZ_CP072308
Coordinates   1022423..1023829 (+) Length   468 a.a.
NCBI ID   WP_063951057.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 6N2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017423..1028829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT6N2_RS05110 (AT6N2_C1264) - 1018502..1018804 (-) 303 WP_209088963.1 AzlD family protein -
  AT6N2_RS05115 (AT6N2_C1265) - 1018801..1019505 (-) 705 WP_209088966.1 AzlC family ABC transporter permease -
  AT6N2_RS05120 (AT6N2_C1266) - 1019601..1020458 (-) 858 WP_209088969.1 AraC family transcriptional regulator -
  AT6N2_RS05125 (AT6N2_C1267) alr 1020617..1021792 (+) 1176 WP_209088972.1 alanine racemase -
  AT6N2_RS05130 (AT6N2_C1268) - 1021858..1022169 (+) 312 WP_209088975.1 type II toxin-antitoxin system ParD family antitoxin -
  AT6N2_RS05135 - 1022108..1022416 (+) 309 WP_233282476.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AT6N2_RS05140 (AT6N2_C1270) radA/sms 1022423..1023829 (+) 1407 WP_063951057.1 DNA repair protein RadA Machinery gene
  AT6N2_RS05145 (AT6N2_C1271) - 1023919..1024506 (+) 588 WP_063951056.1 CvpA family protein -
  AT6N2_RS05150 (AT6N2_C1272) purF 1024645..1026153 (+) 1509 WP_209088982.1 amidophosphoribosyltransferase -
  AT6N2_RS05155 (AT6N2_C1273) - 1026300..1027040 (+) 741 WP_209088985.1 SDR family NAD(P)-dependent oxidoreductase -
  AT6N2_RS05160 (AT6N2_C1274) cysS 1027252..1028637 (+) 1386 WP_209088987.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49482.37 Da        Isoelectric Point: 6.4219

>NTDB_id=481850 AT6N2_RS05140 WP_063951057.1 1022423..1023829(+) (radA/sms) [Agrobacterium tumefaciens strain 6N2]
MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKAPKKGRPVTLTSLSGEIEEAPRIPTGISELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRIIYVSGEEAVAQVRLRAQRLGAADTDVLLAAETNVEDILAT
ISEGKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDRGLREVSNPSELFLGERNEKSPGAAVFAGIEGTRPILVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSG
AVRPVSHTGQRLKEAEKLGFSAALLPSASAELPKGGKGRWTEIESLPDLVARIAGSGNRFKQVEDDEY

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=481850 AT6N2_RS05140 WP_063951057.1 1022423..1023829(+) (radA/sms) [Agrobacterium tumefaciens strain 6N2]
ATGGCCAAAGCCAAGACTCAATTCGTGTGCCAGAACTGTGGTACGGTGCATAACCGCTGGGCGGGAAAATGCGAAGGCTG
CGGCGAATGGAATACCATCGTCGAAGAGGACCCGATGGGCGGCATCGGCTCCGGGCCGGGCAAGGCGCCCAAGAAGGGCC
GGCCTGTCACGCTCACCTCACTTTCAGGTGAAATCGAGGAGGCGCCGCGCATCCCGACCGGCATCAGCGAACTCGACCGG
GCGACCGGCGGCGGTTTCGTGCGTGGCTCAGCCGTCCTGATCGGCGGCGACCCGGGCATCGGCAAATCGACGCTCCTCAT
GCAGGCGGCGGCCGCCCTTTCGCGGCGCGGCCATCGCATCATCTATGTCTCGGGCGAAGAGGCGGTGGCGCAGGTGCGCT
TGCGGGCGCAACGTCTCGGCGCTGCTGACACCGATGTGCTGCTGGCGGCGGAAACGAATGTCGAGGACATTCTGGCCACG
ATCTCCGAGGGCAAGCGGCCCGATCTCGTCATCATCGATTCAATCCAGACCCTGTGGAGCGATACGGCCGATTCCGCTCC
CGGCACGGTGACGCAGGTGCGCACCGGCGTGCAGGCGATGATCCGCTTCGCCAAGCAGACGGGTGCGACCATGGTGCTTG
TCGGCCATGTTACCAAGGAAGGGCAGATCGCCGGGCCGCGCGTGGTGGAGCATATGGTCGATGCCGTGCTCTATTTCGAG
GGAGATCGCGGCCACCATTACCGTATCCTTCGCACCGTCAAAAACCGCTTCGGACCGACCGATGAGATCGGCGTCTTCGA
AATGTCGGATCGCGGCCTCAGGGAAGTGTCCAATCCATCGGAACTGTTTCTAGGGGAACGCAACGAAAAATCACCAGGCG
CTGCGGTTTTTGCCGGCATCGAAGGCACCCGCCCCATACTGGTCGAGGTTCAGGCACTTGTCGCGGCGACATCGCTCGGC
ACGCCGCGCCGCGCGGTCGTCGGCTGGGACAGTTCCCGCCTCGCGATGATTCTTGCCGTACTGGAGGCGCATTGCGGGGT
GAAGCTTGGCCAGCACGATGTCTATCTCAACGTCGCGGGTGGCTACCGTATTTCCGAACCGGCCGCCGATATGGCGATTG
CGTCTGCGCTGGTTTCCTCGCTTGCCGGTCTTGCCCTGCCCGCCGATTGCGTCTATTTCGGCGAAATCAGCCTGTCGGGT
GCGGTGCGCCCGGTCTCGCATACCGGCCAGCGTTTGAAAGAAGCGGAAAAACTCGGCTTCTCCGCCGCACTTCTGCCTTC
TGCTTCGGCTGAATTGCCGAAAGGCGGCAAAGGGCGCTGGACGGAAATTGAAAGCCTTCCGGACCTCGTGGCCCGCATCG
CCGGCTCCGGCAACCGGTTCAAACAGGTTGAGGACGACGAATATTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

49.661

94.658

0.47
  radA Streptococcus pneumoniae Rx1

46.606

94.444

0.44
  radA Streptococcus pneumoniae D39

46.606

94.444

0.44
  radA Streptococcus pneumoniae R6

46.606

94.444

0.44
  radA Streptococcus pneumoniae TIGR4

46.606

94.444

0.44
  radA Streptococcus mitis SK321

46.774

92.735

0.434
  radA Streptococcus mitis NCTC 12261

46.544

92.735

0.432