Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IC571_RS09745 Genome accession   NZ_CP061321
Coordinates   1889477..1890367 (+) Length   296 a.a.
NCBI ID   WP_215316399.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH2A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884477..1895367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC571_RS09715 (IC571_09705) pth 1884682..1885272 (+) 591 WP_215316387.1 aminoacyl-tRNA hydrolase -
  IC571_RS09720 (IC571_09710) - 1885291..1885551 (-) 261 WP_215316390.1 YfhL family 4Fe-4S dicluster ferredoxin -
  IC571_RS09725 (IC571_09715) coaD 1885571..1886068 (-) 498 WP_215316391.1 pantetheine-phosphate adenylyltransferase -
  IC571_RS09730 (IC571_09720) rsmD 1886105..1886701 (-) 597 WP_215316393.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IC571_RS09735 (IC571_09725) - 1886712..1888049 (-) 1338 WP_215316395.1 pitrilysin family protein -
  IC571_RS09740 (IC571_09730) - 1888046..1889413 (-) 1368 WP_215316397.1 pitrilysin family protein -
  IC571_RS09745 (IC571_09735) pilA 1889477..1890367 (+) 891 WP_215316399.1 signal recognition particle-docking protein FtsY Machinery gene
  IC571_RS09750 (IC571_09740) rpoH 1890462..1891385 (+) 924 WP_215316401.1 RNA polymerase sigma factor RpoH -
  IC571_RS09755 (IC571_09745) - 1891416..1892006 (-) 591 WP_215316403.1 SCO family protein -
  IC571_RS09760 (IC571_09750) cyoE 1892017..1892910 (-) 894 WP_215316404.1 heme o synthase -
  IC571_RS09765 (IC571_09755) - 1892907..1894010 (-) 1104 WP_215316406.1 heme A synthase -
  IC571_RS09770 (IC571_09760) - 1894010..1894666 (-) 657 WP_215316407.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31365.95 Da        Isoelectric Point: 7.5497

>NTDB_id=481821 IC571_RS09745 WP_215316399.1 1889477..1890367(+) (pilA) [Polynucleobacter sp. MWH-UH2A]
MFGLRKTLGSLFKSSKTDDAWFDHLEESLIQSDVGLPTTEQLMAKLRKAAKSEKASSAEELQALLIQEVTGLLQSLEPNP
NPLFASTSSHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQEGGDAAA
VAHDAIHSAISRKNDVLIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTA
IIVTKLDGTAKGGVICALAHTLKEGPKPAILALGKGEKIDDLAPFTAGQYSSELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=481821 IC571_RS09745 WP_215316399.1 1889477..1890367(+) (pilA) [Polynucleobacter sp. MWH-UH2A]
ATGTTTGGATTACGTAAAACCCTAGGATCTCTATTTAAATCAAGCAAAACGGATGATGCTTGGTTTGATCATTTAGAAGA
ATCACTGATTCAGAGTGATGTGGGTTTACCCACGACTGAACAATTGATGGCGAAGCTACGCAAGGCTGCTAAATCAGAAA
AAGCATCCAGCGCCGAAGAACTACAGGCCTTGCTCATCCAAGAGGTTACAGGCCTATTACAAAGCCTTGAGCCCAACCCC
AACCCATTGTTTGCCAGCACTTCAAGCCATATTCCTGAAGTGTGGCTAGTGGTTGGCGTCAATGGCGCGGGCAAAACAAC
CACCATTGGCAAGCTTTGCAAGCTCTTTCAATCTCAAGGCAAATCGGTATTGTTGGCAGCAGGCGACACCTTTAGGGCAG
CCGCACGCAATCAATTGCAAGAATGGGGTGGTCGCAACCAAGTAGATGTGATTACCCAAGAGGGTGGGGATGCAGCCGCT
GTTGCACACGATGCAATTCACTCTGCAATCTCTCGCAAAAATGATGTTCTGATTATCGATACCGCGGGTCGCCTTGCCAC
TCAAGACCATCTGATGGAAGAGCTCAAGAAAGTTAAAAGAGTGATTGGCAAAGCCCTTCCTGGAGCGCCTCACCATACCC
TCTTGGTACTAGATGGCAATACCGGACAAAATGGCTTAAGCCAAGTAAAGGCGTTTCATGCTGCTTTGGGCCTCACCGCA
ATCATTGTTACCAAACTTGATGGTACTGCTAAAGGGGGTGTAATTTGCGCCCTGGCCCATACCCTCAAAGAGGGACCCAA
GCCGGCAATTTTGGCTCTAGGTAAAGGCGAAAAAATTGATGATTTAGCCCCATTCACGGCAGGGCAATATTCCTCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(92-295)

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.195

98.986

0.507