Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQ359_RS06620 Genome accession   NZ_CP061319
Coordinates   1262764..1264128 (-) Length   454 a.a.
NCBI ID   WP_215301308.1    Uniprot ID   -
Organism   Polynucleobacter sp. AM-7D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257764..1269128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ359_RS06605 (GQ359_06610) dapD 1259827..1260654 (+) 828 WP_215333495.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  GQ359_RS06610 (GQ359_06615) dapE 1260664..1261815 (+) 1152 WP_215386119.1 succinyl-diaminopimelate desuccinylase -
  GQ359_RS06615 (GQ359_06620) prmB 1261852..1262748 (+) 897 WP_215386121.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  GQ359_RS06620 (GQ359_06625) radA 1262764..1264128 (-) 1365 WP_215301308.1 DNA repair protein RadA Machinery gene
  GQ359_RS06625 (GQ359_06630) - 1264174..1264665 (-) 492 WP_251367843.1 hypothetical protein -
  GQ359_RS06630 (GQ359_06635) - 1264680..1266620 (-) 1941 WP_215386126.1 potassium transporter Kup -
  GQ359_RS06640 (GQ359_06645) - 1267144..1267902 (+) 759 WP_215386128.1 HNH endonuclease -
  GQ359_RS06645 (GQ359_06650) - 1267856..1268896 (-) 1041 WP_215386130.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48161.00 Da        Isoelectric Point: 7.3470

>NTDB_id=481805 GQ359_RS06620 WP_215301308.1 1262764..1264128(-) (radA) [Polynucleobacter sp. AM-7D1]
MAKIKTIYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPEVSSNTRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLRVIPVERIDQAISAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481805 GQ359_RS06620 WP_215301308.1 1262764..1264128(-) (radA) [Polynucleobacter sp. AM-7D1]
TTGGCCAAGATTAAAACAATCTATATCTGTCAGTCATGCGGTGGAACCTCTGCTAAGTGGCAAGGACAATGCCCTTCATG
CCAGGCATGGAATACGCTAGAAGAAGGTTTGCCTGAGGTGAGCTCCAACACCCGTTTTCAGGGTTTAGCGCAGTCACTTC
CGCGTCAAAAACTTTCTGCTATCAGTGCTGAAGATCTCCCACGCTTTAGTACTGGTGTCGAAGAGTTTGACCGTGTATTG
GGTGGCGGACTAGTTCCTGGTGGGGTGGTTCTATTAGGTGGTGATCCTGGCATTGGTAAGTCAACCTTACTGCTGCAAGC
ACTCGCTGAGATGAGTGCTGCAGGCATGAATGTTCTTTATAGTAGTGGCGAGGAGTCTGCCGCTCAAATTGCATTACGAG
CAAAACGTATTGCACTGGATGCCCCTCAATTAGAAGTCCTCGCTGAGATACAGTTAGAAAAACTCTTATCCATCATGGAT
ACGGTAAAGCCACAGGTCTTAGTGGTGGACTCCATTCAGACCTTGTACTCAGAAGTCCTGAGTTCTGCTCCAGGCTCTGT
TGCGCAAGTGCGCGAGTGTGCTGCGCAACTGACTAGAGCTGCTAAATCGAGCGGCATCTGTGTCCTGATGGTGGGGCACG
TAACTAAAGACGGTCATTTAGCTGGTCCCCGTGTACTTGAGCACATTGTGGATACCGTTCTCTATTTTGAGGGTGACACA
CACTCCTCATTTAGATTGGTGCGCTCGATTAAAAACCGTTTTGGTGCAGTCAATGAGCTCGGCGTCTTTGCTATGACTGA
AAAAGGTTTGCGTGGTGTTGCTAATCCTTCAGCTATTTTCTTATCCCAGCATGCGGAGATGGTGCCTGGTGCTTGCGTGT
TAGTGACGCAAGAGGGCAGTCGTCCGCTCTTGGTAGAAATTCAGGCTTTAGTGGATACAGCGCATATCCCTAATCCAAGA
AGATTGGCAGTTGGACTAGAGCAAGCTCGTCTTGCAATGCTCTTGGCAGTCCTGCATCGTCATGCTGGTGTAGCGTGTTT
TGATCAAGACGTCTTCTTAAACGCAGTTGGTGGCGTGAAGATTTCAGAACCTGCTGCTGACTTGGCAGTGTTATTGGCAA
TTCAATCTTCGATTCGGAATAAAGCCTTGCCTAAAGAGCTGATTGTCTTTGGTGAGGTTGGTTTGGCTGGAGAAATTCGT
CCATGCCCACGTGGTCAAGAGCGTTTGAAAGAAGCGGCTAAGCTCGGCTTCACAGTGGCAATCATTCCGAAGGCAAATAT
GCCGAAGACAAAGATTCCAGGGCTAAGAGTGATACCAGTAGAGCGTATTGATCAGGCTATCTCTGCGGCAGCAGAGTTGA
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

100

0.491
  radA Streptococcus pneumoniae Rx1

45.778

99.119

0.454
  radA Streptococcus pneumoniae D39

45.778

99.119

0.454
  radA Streptococcus pneumoniae R6

45.778

99.119

0.454
  radA Streptococcus pneumoniae TIGR4

45.778

99.119

0.454
  radA Streptococcus mitis NCTC 12261

45.778

99.119

0.454
  radA Streptococcus mitis SK321

45.778

99.119

0.454