Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   J6I88_RS08920 Genome accession   NZ_CP072305
Coordinates   1874406..1876667 (-) Length   753 a.a.
NCBI ID   WP_000166992.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1869406..1881667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS08910 (J6I88_08910) adeA 1869961..1871151 (+) 1191 WP_005135238.1 multidrug efflux RND transporter periplasmic adaptor subunit AdeA -
  J6I88_RS08915 (J6I88_08915) adeB 1871148..1874258 (+) 3111 WP_000987595.1 multidrug efflux RND transporter permease subunit AdeB -
  J6I88_RS08920 (J6I88_08920) uvrA 1874406..1876667 (-) 2262 WP_000166992.1 ATP-binding cassette domain-containing protein Machinery gene
  J6I88_RS08925 (J6I88_08925) - 1877972..1878262 (+) 291 WP_005135242.1 hypothetical protein -
  J6I88_RS08930 (J6I88_08930) - 1878655..1879188 (+) 534 WP_000731817.1 fimbrial protein -
  J6I88_RS08935 (J6I88_08935) - 1879275..1880009 (+) 735 WP_000774083.1 molecular chaperone -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84701.08 Da        Isoelectric Point: 7.9572

>NTDB_id=481797 J6I88_RS08920 WP_000166992.1 1874406..1876667(-) (uvrA) [Acinetobacter baumannii strain KSK Sensitive]
MTKRTINIYGARQNNLKNISLKIPKHKIVVFTGVSGSGKSSLVFETIGAEAQRQINETQDSFVRNRLQHFGVTDVDKIEN
LNVPVIINQKPLTGNIRSTVATITDIYANLRLLFSRMGEPFVGYSNVFSFNHPNGMCPQCEGIGIEQTIDIYKILDLDKS
LNEEGAIDFPTYQPTAWRWTRYADSGYFDLDKKLKDYSEKEWDLFLYAPQHKPLNPTSKWRKTALYEGLIPRFERNFLKG
EAQERNRYRNKLERIITIKECSLCKGQRLNQKSLSCKINGKNIAECTALSVSRLLEFLESIKSEKFETVLHEIKNKLNNL
NLVGLSYLNLNRVSNTLSGGESQRIKMVKHLGNSLVDLLYIFDEPSIGLHPKDLDNIIKIIQKIRDKGNSVLLVEHDPDL
IRTADHVIDMGPLSGINGGEIIYQGTFEELKNSSGLAGAFFRRPNTYKKEPRMGNEWISIKNAHLFNLKNIDVDIPKNCL
TVITGVAGSGKSTLISKVLPQQYPETKVVDQSAITASIRSNLLTYLDLLDPIRQLFAKTNKVSAKFFSFNSEGACPQCKG
SGIERVELAFLDDIEMTCDVCHGSGYAPEVLKYLYKDKNIAEILKMTVAEASNFFEDRILQQQFNSLMSLGLDYIAIGQR
LNTFSGGERQRLKLTKQINETDNIFVLDEPSTGLHPSDTEKLISLLNNLVEKGNTVIVIEHNLDIISQADWIVDIGPLAG
DKGGELVFSGTVSGLLSAEKSLTGYYLKKYLEL

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=481797 J6I88_RS08920 WP_000166992.1 1874406..1876667(-) (uvrA) [Acinetobacter baumannii strain KSK Sensitive]
ATGACTAAAAGAACAATAAATATTTATGGTGCCAGACAAAATAACCTTAAAAATATTTCATTGAAGATTCCTAAACATAA
AATCGTTGTCTTTACTGGAGTCTCTGGTTCAGGTAAATCTTCTTTAGTTTTCGAGACTATTGGCGCAGAAGCTCAAAGAC
AAATTAATGAAACTCAAGATAGTTTTGTACGTAATCGCTTGCAACATTTTGGTGTTACTGACGTTGATAAAATTGAAAAT
TTAAATGTACCTGTGATTATTAATCAAAAACCTTTAACGGGCAATATTCGCTCAACTGTTGCAACAATTACAGATATTTA
TGCCAATCTTCGCTTGTTATTTTCACGTATGGGTGAGCCGTTTGTTGGATACTCCAATGTCTTTTCTTTTAATCACCCAA
ATGGCATGTGTCCACAATGCGAAGGTATTGGAATCGAGCAAACAATTGATATTTACAAAATATTAGATTTAGATAAATCC
TTAAATGAAGAAGGTGCTATAGACTTCCCTACTTATCAACCTACAGCATGGCGTTGGACGCGATATGCAGATTCAGGTTA
CTTTGATTTAGATAAAAAATTAAAAGATTATAGTGAAAAAGAATGGGACTTATTTTTGTATGCTCCTCAGCACAAACCTT
TAAACCCGACAAGTAAATGGAGAAAAACCGCACTTTATGAAGGACTAATTCCCAGATTTGAGCGTAACTTTTTAAAAGGT
GAAGCACAGGAAAGAAATCGTTATAGAAATAAACTTGAGCGAATTATTACAATCAAAGAATGCTCCTTATGTAAGGGACA
ACGGCTAAATCAAAAATCCTTATCTTGTAAGATTAACGGTAAAAATATTGCGGAATGTACGGCCCTATCCGTATCAAGGC
TTTTAGAGTTTCTCGAATCGATAAAAAGTGAAAAATTTGAAACCGTTTTGCACGAAATAAAAAATAAACTCAATAACTTA
AATCTCGTTGGACTCAGCTATTTAAACCTTAACCGTGTCAGCAATACATTGTCGGGAGGAGAATCACAACGAATTAAAAT
GGTTAAACATTTGGGTAATAGTCTGGTTGACCTACTCTATATTTTTGATGAACCAAGTATTGGCCTGCACCCCAAAGATT
TAGATAATATTATTAAAATTATTCAAAAAATTAGAGATAAGGGAAATAGTGTTTTATTGGTTGAACATGATCCTGATCTT
ATTAGAACAGCTGATCATGTCATTGATATGGGGCCTCTTTCTGGTATTAACGGCGGTGAAATTATTTACCAAGGAACTTT
TGAAGAATTAAAAAATTCATCAGGTTTAGCAGGAGCGTTTTTTAGAAGGCCAAATACCTATAAGAAAGAACCACGTATGG
GCAATGAATGGATTTCAATTAAAAATGCTCATTTATTCAATTTAAAAAATATTGATGTCGACATTCCTAAGAACTGTCTA
ACCGTTATTACAGGAGTCGCTGGTTCAGGAAAAAGCACATTAATAAGTAAAGTATTACCACAACAATATCCTGAAACAAA
AGTTGTTGATCAATCTGCAATTACTGCAAGTATTCGCTCAAATTTATTGACCTATCTTGACCTTCTTGATCCGATTCGTC
AGCTATTTGCAAAAACAAATAAAGTAAGTGCCAAGTTCTTTAGTTTTAATAGTGAAGGTGCTTGCCCTCAATGTAAAGGA
TCTGGTATCGAAAGGGTTGAACTTGCATTTTTAGATGATATTGAAATGACATGTGATGTTTGTCATGGTTCTGGATATGC
ACCTGAAGTTTTAAAATATCTTTATAAAGATAAAAATATTGCTGAAATTTTAAAAATGACGGTTGCAGAAGCAAGCAACT
TTTTTGAAGATCGAATTTTACAGCAACAATTTAATTCTTTGATGAGTTTGGGGCTAGACTACATTGCAATCGGCCAACGC
TTAAATACATTTTCGGGTGGTGAGCGTCAAAGGTTAAAACTCACAAAACAAATTAATGAAACAGATAATATTTTTGTATT
GGATGAACCGAGTACAGGACTACACCCTTCTGATACTGAAAAACTAATTAGTTTATTAAATAACTTAGTTGAGAAAGGCA
ACACAGTCATTGTGATTGAACATAACTTAGACATCATAAGTCAAGCCGACTGGATTGTTGATATTGGCCCTTTGGCGGGT
GACAAAGGTGGTGAATTGGTATTTTCAGGAACTGTTAGCGGTTTGCTTTCAGCAGAAAAATCTTTAACAGGTTATTATTT
GAAAAAATATTTAGAGCTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(468-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

35.045

100

0.363
  uvrA Streptococcus pneumoniae TIGR4

35.045

100

0.363
  uvrA Streptococcus pneumoniae D39

35.045

100

0.363