Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J6I88_RS04420 Genome accession   NZ_CP072305
Coordinates   919572..920960 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 914572..925960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS04395 (J6I88_04395) fdhD 915004..915795 (+) 792 WP_000187645.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  J6I88_RS04400 (J6I88_04400) - 915915..916307 (+) 393 WP_000119198.1 YkvA family protein -
  J6I88_RS04405 (J6I88_04405) - 916412..917479 (+) 1068 WP_000706087.1 4-phosphoerythronate dehydrogenase -
  J6I88_RS04410 (J6I88_04410) epmA 917476..918450 (+) 975 WP_000059542.1 EF-P lysine aminoacylase EpmA -
  J6I88_RS04415 (J6I88_04415) - 918509..919489 (-) 981 WP_109426638.1 Tim44 domain-containing protein -
  J6I88_RS04420 (J6I88_04420) radA/sms 919572..920960 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  J6I88_RS04425 (J6I88_04425) - 921450..922856 (+) 1407 WP_000070815.1 amino acid permease -
  J6I88_RS04430 (J6I88_04430) lptM 922997..923221 (+) 225 WP_001255202.1 LPS translocon maturation chaperone LptM -
  J6I88_RS04435 (J6I88_04435) lysA 923244..924494 (+) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  J6I88_RS04440 (J6I88_04440) dapF 924500..925345 (+) 846 WP_000923478.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=481786 J6I88_RS04420 WP_000048860.1 919572..920960(-) (radA/sms) [Acinetobacter baumannii strain KSK Sensitive]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=481786 J6I88_RS04420 WP_000048860.1 919572..920960(-) (radA/sms) [Acinetobacter baumannii strain KSK Sensitive]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGTATTAGCGAA
TTTGACCGCGTACTTGGCGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGTCTTGACCTACCAACAGACCAATTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATATTTTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATCAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGACGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAACTTGCAGTTTTTGGTGAAGTGGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCTGGCGTACAAGTGATTGCAGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422