Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD975_RS06795 Genome accession   NZ_CP061316
Coordinates   1296699..1298063 (-) Length   454 a.a.
NCBI ID   WP_215301308.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Jannik-300A-C4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291699..1303063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD975_RS06780 (FD975_06775) dapD 1293763..1294590 (+) 828 WP_215301303.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  FD975_RS06785 (FD975_06780) dapE 1294600..1295751 (+) 1152 WP_215301305.1 succinyl-diaminopimelate desuccinylase -
  FD975_RS06790 (FD975_06785) prmB 1295788..1296684 (+) 897 WP_215301306.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  FD975_RS06795 (FD975_06790) radA 1296699..1298063 (-) 1365 WP_215301308.1 DNA repair protein RadA Machinery gene
  FD975_RS06800 (FD975_06795) - 1298109..1298618 (-) 510 WP_251371168.1 hypothetical protein -
  FD975_RS06805 (FD975_06800) - 1298615..1300555 (-) 1941 WP_215301310.1 potassium transporter Kup -
  FD975_RS06815 (FD975_06810) - 1300960..1301928 (+) 969 WP_215301311.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  FD975_RS06820 (FD975_06815) - 1302071..1302352 (-) 282 WP_215301313.1 hypothetical protein -
  FD975_RS06825 (FD975_06820) - 1302363..1302896 (-) 534 WP_215301315.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48161.00 Da        Isoelectric Point: 7.3470

>NTDB_id=481783 FD975_RS06795 WP_215301308.1 1296699..1298063(-) (radA) [Polynucleobacter sp. AP-Jannik-300A-C4]
MAKIKTIYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPEVSSNTRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLRVIPVERIDQAISAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481783 FD975_RS06795 WP_215301308.1 1296699..1298063(-) (radA) [Polynucleobacter sp. AP-Jannik-300A-C4]
TTGGCCAAGATTAAAACAATCTATATCTGTCAGTCATGCGGTGGAACCTCTGCTAAGTGGCAAGGACAATGTCCTTCATG
CCAGGCATGGAATACGCTAGAAGAAGGTTTACCTGAGGTGAGCTCCAACACTCGTTTTCAGGGTTTAGCGCAGTCACTTC
CGCGTCAAAAACTTTCCGCTATCAGTGCTGAAGATCTCCCACGTTTTAGTACTGGTGTCGAAGAGTTTGATCGTGTGCTG
GGTGGTGGATTAGTTCCTGGCGGGGTTGTTCTATTGGGTGGTGATCCCGGTATTGGTAAATCAACCTTACTGCTGCAAGC
ACTCGCTGAGATGAGTGCTGCAGGCATGAATGTTCTTTATAGTAGTGGCGAGGAGTCAGCTGCGCAAATTGCTTTACGAG
CAAAACGTATTGCACTGGATGCCCCTCAATTGGAAGTCCTCGCTGAGATACAGTTAGAAAAGCTCTTATCCATCATGGAT
ACCGTCAAGCCGCAGGTCTTAGTGGTGGACTCTATTCAGACCTTGTACTCAGAAGTGCTGAGTTCTGCCCCTGGTTCTGT
TGCGCAAGTGCGCGAGTGTGCCGCGCAACTGACGAGAGCTGCTAAATCCAGTGGCATCTGTGTCCTGATGGTGGGGCACG
TAACTAAAGACGGTCATTTAGCTGGTCCCCGTGTGCTTGAGCATATTGTGGATACAGTGCTCTATTTTGAGGGTGATACA
CACTCCTCATTTAGATTGGTGCGCTCGATTAAAAACCGTTTTGGTGCAGTCAATGAGCTCGGCGTCTTTGCTATGACTGA
AAAAGGTTTGCGCGGAGTTGCTAATCCTTCTGCAATTTTTCTATCCCAGCATGCGGAGATGGTGCCTGGTGCTTGCGTGT
TAGTCACTCAAGAGGGTAGCCGTCCACTCTTGGTAGAAATTCAGGCATTAGTTGATACAGCGCATATCCCTAATCCAAGA
AGATTGGCAGTTGGACTGGAGCAAGCTCGTCTTGCAATGCTCTTGGCAGTTTTGCATCGTCATGCTGGTGTAGCGTGTTT
TGATCAAGACGTCTTCTTAAACGCAGTTGGTGGCGTGAAGATTTCAGAACCAGCTGCTGACTTGGCAGTGTTGTTGGCTA
TTCAATCTTCGATTCGGAATAAAGCCTTACCTAAAGAGTTGATTGTCTTTGGTGAGGTTGGTTTGGCTGGAGAAATTCGT
CCATGCCCACGTGGTCAAGAGCGTTTGAAAGAAGCGGCTAAGCTCGGCTTTACAGTGGCAATCATTCCGAAGGCAAATAT
GCCGAAGACAAAGATTCCAGGACTAAGAGTGATACCAGTAGAGCGTATTGATCAGGCTATCTCTGCGGCAGCAGAGTTGA
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

100

0.491
  radA Streptococcus pneumoniae Rx1

45.778

99.119

0.454
  radA Streptococcus pneumoniae D39

45.778

99.119

0.454
  radA Streptococcus pneumoniae R6

45.778

99.119

0.454
  radA Streptococcus pneumoniae TIGR4

45.778

99.119

0.454
  radA Streptococcus mitis NCTC 12261

45.778

99.119

0.454
  radA Streptococcus mitis SK321

45.778

99.119

0.454