Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2747_RS07225 Genome accession   NZ_CP061314
Coordinates   1400069..1401433 (-) Length   454 a.a.
NCBI ID   WP_215333120.1    Uniprot ID   -
Organism   Polynucleobacter corsicus strain AP-Melu-1000-A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395069..1406433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2747_RS07210 (C2747_07190) dapD 1397117..1397944 (+) 828 WP_215307856.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  C2747_RS07215 (C2747_07195) dapE 1397962..1399113 (+) 1152 WP_215330925.1 succinyl-diaminopimelate desuccinylase -
  C2747_RS07220 (C2747_07200) prmB 1399152..1400048 (+) 897 WP_215330926.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  C2747_RS07225 (C2747_07205) radA 1400069..1401433 (-) 1365 WP_215333120.1 DNA repair protein RadA Machinery gene
  C2747_RS07230 (C2747_07210) - 1401438..1401947 (-) 510 WP_215330927.1 hypothetical protein -
  C2747_RS07235 (C2747_07215) - 1401944..1403785 (-) 1842 WP_251374864.1 potassium transporter Kup -
  C2747_RS07245 (C2747_07225) - 1404298..1405269 (-) 972 WP_215330929.1 dienelactone hydrolase family protein -
  C2747_RS07250 (C2747_07230) - 1405433..1405873 (-) 441 WP_215330930.1 tautomerase family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48146.97 Da        Isoelectric Point: 7.3470

>NTDB_id=481760 C2747_RS07225 WP_215333120.1 1400069..1401433(-) (radA) [Polynucleobacter corsicus strain AP-Melu-1000-A1]
MAKIKTIYICQSCGGTSAKWQGQCPSCQAWNTLEEGVPEVSSNTRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLRVIPVERIDQAISAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481760 C2747_RS07225 WP_215333120.1 1400069..1401433(-) (radA) [Polynucleobacter corsicus strain AP-Melu-1000-A1]
TTGGCCAAAATAAAAACAATCTATATCTGTCAGTCATGTGGCGGCACCTCCGCTAAATGGCAGGGGCAGTGCCCCTCATG
CCAGGCATGGAATACCTTGGAAGAGGGTGTTCCCGAGGTCAGCTCCAACACCCGCTTTCAGGGGCTGGCACAGTCACTCC
CCCGTCAAAAACTTTCCGCCATATCGGCTGAAGATCTGCCGCGCTTTAGTACTGGCGTAGAGGAGTTTGACCGCGTACTG
GGGGGTGGATTAGTTCCTGGTGGTGTTGTTCTATTAGGTGGTGATCCTGGCATTGGTAAATCCACTCTCTTGCTCCAAGC
CCTTGCTGAGATGAGTGCTGCTGGCATGAATGTGCTCTATAGCAGTGGTGAAGAGTCTGCAGCGCAAATTGCATTACGTG
CCAAACGCATTGCATTAGACGCACCTCAATTAGAGGTATTGGCAGAGATTCAGTTGGAAAAACTCTTATCCATTATGGAT
ACGGTAAAGCCACAGGTCTTGGTAGTCGATTCTATTCAGACTTTGTATTCAGAAGTATTGAGCTCAGCTCCAGGTTCGGT
TGCCCAAGTGCGAGAGTGCGCTGCTCAATTAACTAGAGCTGCTAAATCTAGTGGTATTTGTGTTTTGATGGTGGGGCATG
TCACAAAGGATGGCCACTTAGCCGGCCCTCGTGTGCTCGAGCATATTGTGGATACCGTTCTTTACTTTGAAGGTGATACC
CACTCTTCATTTAGATTAGTGCGCTCGATTAAAAATCGCTTTGGCGCAGTCAATGAGCTCGGTGTATTTGCGATGACTGA
AAAAGGTCTACGTGGTGTTGCAAACCCTTCGGCTATTTTTCTTTCTCAGCATGCGGAGATGGTGCCGGGCGCCTGCGTAT
TGGTGACGCAAGAAGGCAGTCGACCACTCTTAGTAGAAATTCAGGCGCTAGTCGATACCGCGCATATTCCCAATCCTCGC
CGCCTAGCCGTTGGTTTAGAGCAAGCCCGTTTAGCCATGCTCTTAGCAGTGTTGCATCGCCACGCCGGTGTTGCCTGCTT
TGATCAAGACGTCTTTTTAAATGCAGTCGGTGGTGTGAAGATTTCAGAACCGGCAGCTGACTTAGCAGTGTTGTTGGCAA
TTCAGTCTTCGATTCGCAACAAGGCCTTGCCTAAAGAGTTGATCGTATTTGGTGAGGTTGGCTTAGCGGGAGAGATTCGT
CCCTGCCCACGTGGTCAGGAGCGCTTGAAAGAGGCTGCCAAACTCGGATTTACTGTAGCCATTATTCCGAAGGCCAATAT
GCCTAAGACCAAGATTCCAGGATTAAGAGTGATACCAGTAGAGCGTATTGATCAAGCGATCTCTGCAGCGGCAGAGCTGA
GCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

100

0.491
  radA Streptococcus pneumoniae Rx1

46

99.119

0.456
  radA Streptococcus pneumoniae D39

46

99.119

0.456
  radA Streptococcus pneumoniae R6

46

99.119

0.456
  radA Streptococcus pneumoniae TIGR4

46

99.119

0.456
  radA Streptococcus mitis NCTC 12261

46

99.119

0.456
  radA Streptococcus mitis SK321

46

99.119

0.456