Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICV90_RS02805 Genome accession   NZ_CP061306
Coordinates   548092..549456 (+) Length   454 a.a.
NCBI ID   WP_215359514.1    Uniprot ID   -
Organism   Polynucleobacter sp. JS-JIR-II-b4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 543092..554456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV90_RS02785 (ICV90_02790) - 544901..545272 (+) 372 WP_215359508.1 glycine zipper family protein -
  ICV90_RS02795 (ICV90_02800) - 545603..547546 (+) 1944 WP_215359510.1 potassium transporter Kup -
  ICV90_RS02800 (ICV90_02805) - 547591..548052 (+) 462 WP_251367773.1 hypothetical protein -
  ICV90_RS02805 (ICV90_02810) radA 548092..549456 (+) 1365 WP_215359514.1 DNA repair protein RadA Machinery gene
  ICV90_RS02810 (ICV90_02815) prmB 549481..550377 (-) 897 WP_215359516.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  ICV90_RS02815 (ICV90_02820) dapE 550439..551590 (-) 1152 WP_215359518.1 succinyl-diaminopimelate desuccinylase -
  ICV90_RS02820 (ICV90_02825) dapD 551600..552427 (-) 828 WP_215359520.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48206.00 Da        Isoelectric Point: 7.3470

>NTDB_id=481724 ICV90_RS02805 WP_215359514.1 548092..549456(+) (radA) [Polynucleobacter sp. JS-JIR-II-b4]
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPETTSNSRFQGLAQSLPRQKLSAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLKVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481724 ICV90_RS02805 WP_215359514.1 548092..549456(+) (radA) [Polynucleobacter sp. JS-JIR-II-b4]
TTGGCTAAAGTCAAAACGGTTTATATCTGCCAGTCATGTGGCGGCACTTCTGCTAAATGGCAGGGACAATGCCCATCTTG
TCAGGCTTGGAATACCTTAGAAGAAGGTTTACCAGAAACCACTTCTAATTCTCGTTTTCAGGGTTTGGCGCAATCTCTAC
CAAGACAAAAGTTATCTGCGATTACTGCAGAGGATTTACCTAGATTTAGTACGGGTGTTGAAGAGTTTGATCGGGTGCTC
GGCGGAGGCTTGGTGCCGGGTGGTGTTGTGTTACTCGGCGGCGATCCCGGCATTGGCAAATCCACATTGCTATTACAGGC
CTTGGCTGAGATGAGTGCTGCTGGTATGAACGTGCTCTATAGCAGCGGTGAAGAGTCTGCTGCGCAAATTGCATTACGTG
CAAAACGGATTGCACTGGATGCCCCGCAACTTGAAGTGCTAGCAGAGATCCAATTAGAAAAGCTCATTTCTATTATGGAT
ACCGTCAAGCCACAAGTATTGGTGGTGGATTCGATCCAGACTTTGTATTCAGAAGTGTTGAGTTCCGCTCCAGGCTCAGT
GGCTCAGGTGCGTGAATGTGCTGCGCAATTAACTAGAGCCGCAAAATCCAGTGGAATCTGCGTATTGATGGTCGGCCACG
TCACTAAAGACGGACATTTGGCTGGCCCTCGAGTGCTCGAGCATATTGTGGATACCGTTTTGTATTTTGAGGGCGACACC
CATTCTTCTTTCCGTCTAGTGCGCTCCATTAAGAATCGTTTTGGTGCAGTCAATGAGTTGGGTGTATTTGCGATGACCGA
GAAGGGTCTTCGTGGCGTTACTAATCCTTCCGCAATATTCTTGTCGCAACACGAGCAAATGGTTCCAGGTGCCTGCGTAT
TGGTTACGCAAGAAGGCAGCAGACCTCTCTTGGTTGAAATTCAAGCGCTAGTTGATACGGCGCACGTGCCAAATCCACGT
CGCTTAGCCGTTGGTTTGGAGCAGGCACGTCTAGCAATGCTCTTGGCTGTTTTGCACCGCCATGCTGGCGTCGCTTGTTT
TGATCAAGATGTTTTCTTAAATGCTGTTGGTGGCGTCAAAATTTCTGAGCCTGCTGCTGACTTAGCTGTTTTGCTAGCCA
TACAGTCTTCAATTCGTAATCGTGCATTGCCAAAAGAGTTGATAGTCTTTGGTGAGGTTGGTTTGGCGGGAGAGATTCGT
CCTTGTCCGCGCGGTCAAGAGCGCTTGAAAGAGGCGGCTAAGTTAGGCTTTACAGTAGCCATCATTCCGAAGGCAAATAT
GCCCAAGACCAAGATTCCAGGGTTGAAAGTAATTCCGGTGGAGCGAATTGATCAGGCAATCGCAGCTGCGGCCGAACTGA
GTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

99.559

0.491
  radA Streptococcus pneumoniae Rx1

45.778

99.119

0.454
  radA Streptococcus pneumoniae D39

45.778

99.119

0.454
  radA Streptococcus pneumoniae R6

45.778

99.119

0.454
  radA Streptococcus pneumoniae TIGR4

45.778

99.119

0.454
  radA Streptococcus mitis NCTC 12261

45.778

99.119

0.454
  radA Streptococcus mitis SK321

45.778

99.119

0.454