Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   C2759_RS09635 Genome accession   NZ_CP061302
Coordinates   1849312..1850202 (+) Length   296 a.a.
NCBI ID   WP_215355044.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-Unter2-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844312..1855202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2759_RS09605 (C2759_09605) pth 1844482..1845078 (+) 597 WP_215355040.1 aminoacyl-tRNA hydrolase -
  C2759_RS09610 (C2759_09610) - 1845093..1845359 (-) 267 WP_215355041.1 YfhL family 4Fe-4S dicluster ferredoxin -
  C2759_RS09615 (C2759_09615) coaD 1845368..1845871 (-) 504 WP_215355042.1 pantetheine-phosphate adenylyltransferase -
  C2759_RS09620 (C2759_09620) rsmD 1845908..1846537 (-) 630 WP_215356758.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2759_RS09625 (C2759_09625) - 1846534..1847874 (-) 1341 WP_215356759.1 pitrilysin family protein -
  C2759_RS09630 (C2759_09630) - 1847864..1849249 (-) 1386 WP_215355043.1 pitrilysin family protein -
  C2759_RS09635 (C2759_09635) pilA 1849312..1850202 (+) 891 WP_215355044.1 signal recognition particle-docking protein FtsY Machinery gene
  C2759_RS09640 (C2759_09640) rpoH 1850296..1851237 (+) 942 WP_215355045.1 RNA polymerase sigma factor RpoH -
  C2759_RS09645 (C2759_09645) - 1851259..1851864 (-) 606 WP_371816906.1 SCO family protein -
  C2759_RS09650 (C2759_09650) cyoE 1851872..1852765 (-) 894 WP_215355047.1 heme o synthase -
  C2759_RS09655 (C2759_09655) - 1852762..1853892 (-) 1131 WP_215355049.1 heme A synthase -
  C2759_RS09660 (C2759_09660) - 1853889..1854548 (-) 660 WP_215355051.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31534.20 Da        Isoelectric Point: 6.6106

>NTDB_id=481710 C2759_RS09635 WP_215355044.1 1849312..1850202(+) (pilA) [Polynucleobacter sp. MG-Unter2-18]
MFGLRKTLGSLFTSNQTDQAWFDALEESLILSDVGLPTTEQLISKLRKAAKSEKASSAEELKQLLIEEVAILLKSMEPNP
NPLYAHEQKTTPEVWLVIGVNGAGKTTTIGKLCKLFQSQGKSVLLAAGDTFRAAARNQLLEWGGRNQVDVIMQESGDAAA
VAHDAIHAAISRKSDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHQTLLVLDGNTGQNGLNQVRAFHAALELSA
LIVTKLDGTAKGGVICALAHTLSDGPKPAVLALGKGEGIDDLAPFTAAQYSSELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=481710 C2759_RS09635 WP_215355044.1 1849312..1850202(+) (pilA) [Polynucleobacter sp. MG-Unter2-18]
ATGTTCGGCCTACGTAAAACCCTCGGATCCCTATTCACATCCAATCAGACTGATCAAGCCTGGTTTGATGCCCTAGAAGA
ATCTCTCATTCTGAGCGATGTGGGTTTGCCCACGACCGAACAACTGATTAGTAAGCTCCGTAAAGCCGCCAAATCGGAAA
AGGCCAGTAGCGCGGAGGAACTCAAGCAACTGCTGATCGAAGAAGTGGCGATACTCCTGAAATCTATGGAGCCCAATCCT
AATCCCTTGTATGCCCATGAGCAAAAGACCACACCAGAGGTATGGCTAGTAATTGGGGTCAATGGCGCTGGCAAGACCAC
CACGATCGGTAAACTCTGCAAACTGTTTCAGTCTCAAGGCAAATCCGTCTTACTCGCAGCCGGTGACACTTTCCGAGCCG
CAGCACGCAACCAGCTCCTTGAATGGGGTGGTCGCAATCAGGTCGATGTCATCATGCAAGAAAGTGGTGATGCGGCGGCA
GTGGCACACGATGCCATTCATGCGGCGATTTCTCGCAAAAGCGATATCCTCATTATTGACACTGCTGGCAGACTGGCCAC
TCAAGACCATCTGATGGAAGAATTAAAGAAGGTGAAAAGAGTGATCGGTAAGGCCCTTCCTGGGGCACCTCACCAGACTT
TACTGGTTCTAGATGGCAATACTGGTCAAAACGGTTTAAACCAAGTCAGGGCCTTTCATGCTGCTTTAGAGCTTTCCGCC
TTAATCGTGACTAAATTAGATGGCACTGCTAAGGGCGGGGTAATCTGTGCACTTGCCCACACCCTCAGCGATGGGCCAAA
ACCAGCGGTTTTAGCCTTAGGTAAAGGCGAGGGAATTGATGATTTAGCACCCTTCACGGCCGCACAGTATTCTTCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(92-295)

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.584

98.986

0.53