Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2759_RS07080 Genome accession   NZ_CP061302
Coordinates   1353790..1355154 (-) Length   454 a.a.
NCBI ID   WP_215301308.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-Unter2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1348790..1360154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2759_RS07065 (C2759_07060) dapD 1350842..1351669 (+) 828 WP_215354181.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  C2759_RS07070 (C2759_07065) dapE 1351687..1352838 (+) 1152 WP_215354183.1 succinyl-diaminopimelate desuccinylase -
  C2759_RS07075 (C2759_07070) prmB 1352878..1353774 (+) 897 WP_215354184.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  C2759_RS07080 (C2759_07075) radA 1353790..1355154 (-) 1365 WP_215301308.1 DNA repair protein RadA Machinery gene
  C2759_RS07085 (C2759_07080) - 1355159..1355668 (-) 510 WP_215354186.1 hypothetical protein -
  C2759_RS07090 (C2759_07085) - 1355665..1357605 (-) 1941 WP_215354188.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48161.00 Da        Isoelectric Point: 7.3470

>NTDB_id=481705 C2759_RS07080 WP_215301308.1 1353790..1355154(-) (radA) [Polynucleobacter sp. MG-Unter2-18]
MAKIKTIYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPEVSSNTRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLLSIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVANPSAIFLSQHAEMVPGACVLVTQEGSRPLLVEIQALVDTAHIPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLRVIPVERIDQAISAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481705 C2759_RS07080 WP_215301308.1 1353790..1355154(-) (radA) [Polynucleobacter sp. MG-Unter2-18]
TTGGCTAAAATAAAAACAATCTATATTTGTCAGTCATGCGGTGGGACCTCTGCCAAATGGCAAGGTCAATGCCCCTCATG
TCAGGCATGGAACACGCTGGAGGAGGGCTTGCCTGAGGTGAGCTCAAATACTCGCTTTCAGGGATTGGCGCAGTCACTTC
CCCGTCAAAAGCTATCTGCTATTTCGGCTGAAGATCTCCCGCGCTTTAGTACTGGCGTAGAAGAGTTTGATCGCGTACTA
GGTGGTGGATTAGTTCCTGGTGGTGTTGTGCTCTTAGGTGGCGATCCTGGGATTGGTAAATCCACTCTCTTGCTCCAAGC
CCTCGCTGAGATGAGTGCTGCTGGTATGAACGTACTCTATAGCAGTGGCGAAGAGTCTGCAGCGCAAATTGCATTACGTG
CAAAACGTATTGCACTCGATGCGCCACAATTAGAAGTGCTCGCTGAGATTCAGTTAGAAAAGCTCTTATCCATTATGGAT
ACGGTGAAGCCGCAGGTCTTGGTGGTCGATTCGATTCAGACTTTGTATTCAGAGGTACTCAGTTCGGCACCAGGCTCGGT
TGCGCAAGTACGAGAGTGTGCTGCGCAATTAACTAGGGCTGCTAAATCTAGCGGCATTTGCGTGTTAATGGTGGGACATG
TGACTAAAGATGGTCATTTAGCAGGCCCTCGTGTACTGGAACATATTGTCGATACCGTCTTGTATTTTGAGGGTGATACA
CATTCTTCATTTAGATTAGTGCGCTCGATTAAAAACCGCTTTGGTGCAGTCAACGAGCTCGGTGTATTTGCGATGACCGA
AAAAGGTCTGCGTGGCGTTGCCAACCCTTCAGCGATTTTCTTATCGCAGCATGCAGAGATGGTTCCGGGTGCCTGCGTAT
TGGTTACACAAGAGGGCAGTCGCCCACTGTTGGTAGAAATTCAGGCACTAGTAGACACTGCGCATATTCCTAATCCACGT
CGCCTAGCCGTTGGTTTGGAGCAAGCGCGTTTAGCCATGCTCTTAGCGGTACTTCATCGTCATGCTGGTGTTGCCTGCTT
TGATCAGGATGTCTTCTTAAACGCGGTTGGTGGTGTGAAGATCTCAGAGCCAGCAGCTGACTTAGCAGTGCTGTTAGCAA
TCCAGTCTTCGATTCGCAATAAGGCCCTGCCTAAAGAGCTGATCGTATTTGGTGAAGTTGGTTTAGCTGGAGAAATTCGC
CCCTGCCCGAGGGGTCAGGAACGCTTAAAAGAGGCCGCTAAACTTGGATTTACTGTAGCAATCATCCCGAAGGCCAATAT
GCCGAAGACAAAGATTCCGGGATTAAGGGTGATACCGGTAGAGCGTATTGATCAAGCTATTTCTGCAGCAGCAGAGCTTA
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

100

0.491
  radA Streptococcus pneumoniae Rx1

45.778

99.119

0.454
  radA Streptococcus pneumoniae D39

45.778

99.119

0.454
  radA Streptococcus pneumoniae R6

45.778

99.119

0.454
  radA Streptococcus pneumoniae TIGR4

45.778

99.119

0.454
  radA Streptococcus mitis NCTC 12261

45.778

99.119

0.454
  radA Streptococcus mitis SK321

45.778

99.119

0.454