Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GQ367_RS07790 Genome accession   NZ_CP061299
Coordinates   1557465..1558841 (+) Length   458 a.a.
NCBI ID   WP_215290405.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-CaK5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552465..1563841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ367_RS07765 (GQ367_07750) - 1553928..1554929 (+) 1002 WP_215290400.1 SIS domain-containing protein -
  GQ367_RS07770 (GQ367_07755) - 1554931..1555500 (+) 570 WP_215290401.1 HAD family hydrolase -
  GQ367_RS07775 (GQ367_07760) lptC 1555512..1556114 (+) 603 WP_215290402.1 LPS export ABC transporter periplasmic protein LptC -
  GQ367_RS07780 (GQ367_07765) lptA 1556144..1556659 (+) 516 WP_215290403.1 lipopolysaccharide transport periplasmic protein LptA -
  GQ367_RS07785 (GQ367_07770) lptB 1556659..1557408 (+) 750 WP_215290404.1 LPS export ABC transporter ATP-binding protein -
  GQ367_RS07790 (GQ367_07775) rpoN/rpoN1 1557465..1558841 (+) 1377 WP_215290405.1 RNA polymerase factor sigma-54 Machinery gene
  GQ367_RS07795 (GQ367_07780) hpf 1558852..1559178 (+) 327 WP_215290406.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GQ367_RS07800 (GQ367_07785) - 1559217..1559669 (+) 453 WP_215290407.1 PTS sugar transporter subunit IIA -
  GQ367_RS07805 (GQ367_07790) hprK 1559674..1560657 (+) 984 WP_215290408.1 HPr(Ser) kinase/phosphatase -
  GQ367_RS07810 (GQ367_07795) rapZ 1560659..1561564 (+) 906 WP_215290409.1 RNase adapter RapZ -
  GQ367_RS07815 (GQ367_07800) mutY 1561509..1562552 (-) 1044 WP_251370152.1 A/G-specific adenine glycosylase -
  GQ367_RS07820 (GQ367_07805) mutM 1562552..1563388 (-) 837 WP_215290411.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 51429.81 Da        Isoelectric Point: 6.0406

>NTDB_id=481698 GQ367_RS07790 WP_215290405.1 1557465..1558841(+) (rpoN/rpoN1) [Polynucleobacter sp. MWH-CaK5]
MKASLQLRFSQNLALTPQLQQSIKLLQLSAMELEQELIQAAEQNPLINYESETSLSEKEPLEQLSHRSLGGSKSNQFSDE
DDDRLSRISLPESLLDSLIAQIKLLRISPEEKSLMGFIAGNLDEQGYLDADLEDLAEELKTYMDPEDGSPLEQIKRALVR
LQQLEPAGVGARDLAECLRLQLENFAADNKLTMAWKIAHKICSDYLDILASKDLARIKKLLKVDDEDLQDSIQLIKSLNH
HPAAEFDTHVDSTLIPDVIVKNHKGQWTVTLNPAAAPKISLHEEYAKVIKDNRGKEGMDGLQQKLQEARWLVKNVLQRSD
TILKVAKAIVDRQQNFFNHGPIAMRPLVLREIADTIGMHESTVSRVTTQKYMATPAGCFEFKYFFGSQISTDTGGSVSST
AIRTLIKQAVAEENKEKPLSDTQIVDLLASKGFVVARRTIAKYRESLRIPAVHLRRKQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=481698 GQ367_RS07790 WP_215290405.1 1557465..1558841(+) (rpoN/rpoN1) [Polynucleobacter sp. MWH-CaK5]
ATGAAAGCATCTCTTCAGCTCAGATTCTCACAAAATCTAGCCTTAACGCCTCAACTGCAACAATCAATCAAGCTATTGCA
GCTCTCAGCCATGGAGCTTGAGCAAGAGCTGATTCAGGCGGCTGAACAAAATCCATTGATTAACTATGAGTCTGAAACAA
GTCTTTCAGAAAAAGAACCTTTAGAGCAACTATCGCATCGCAGCCTTGGTGGATCTAAAAGCAATCAATTCAGCGATGAA
GATGATGATCGCCTTTCAAGAATTAGCTTGCCAGAGTCCCTACTTGATTCTTTGATTGCACAAATCAAGCTGCTGCGCAT
CAGTCCAGAAGAAAAATCCCTCATGGGTTTTATTGCCGGAAACCTTGATGAACAAGGCTATCTGGATGCTGACCTAGAAG
ATTTGGCAGAAGAGCTCAAGACATACATGGATCCAGAGGATGGGAGCCCTCTTGAGCAAATCAAGCGAGCCTTGGTCCGA
TTGCAACAACTCGAGCCAGCAGGTGTTGGCGCCAGAGATTTGGCTGAGTGCCTACGCCTTCAATTAGAGAACTTTGCCGC
GGATAACAAATTAACCATGGCATGGAAAATTGCCCACAAGATATGCAGTGACTATCTTGATATTCTGGCAAGCAAAGACT
TGGCCAGAATTAAAAAACTTCTAAAAGTAGATGATGAAGATCTTCAGGACAGCATTCAATTAATTAAAAGCCTAAATCAT
CATCCCGCAGCGGAATTTGACACCCACGTTGATTCAACCCTGATTCCAGACGTCATCGTCAAAAACCACAAGGGGCAGTG
GACTGTCACCCTGAACCCTGCTGCCGCCCCCAAAATAAGCCTTCACGAGGAATACGCAAAAGTCATCAAAGACAATCGTG
GCAAAGAAGGCATGGATGGTTTGCAGCAAAAACTACAAGAAGCTAGATGGCTGGTTAAAAATGTGCTACAAAGAAGTGAC
ACCATCTTAAAAGTTGCAAAAGCAATCGTGGATAGACAGCAAAACTTCTTCAATCATGGGCCGATCGCTATGCGACCATT
GGTTTTGAGGGAAATTGCAGACACGATTGGCATGCATGAATCCACGGTTTCTAGGGTAACCACACAAAAATACATGGCCA
CCCCTGCTGGCTGCTTTGAGTTCAAGTACTTTTTTGGCAGCCAAATCTCAACCGATACCGGCGGCTCAGTATCTTCAACA
GCCATCAGAACTTTGATCAAACAAGCTGTTGCCGAAGAAAACAAAGAAAAACCCCTCTCAGACACCCAAATCGTTGATCT
ACTGGCTTCAAAAGGATTTGTGGTGGCTAGAAGAACCATTGCTAAATACAGGGAATCTCTGCGCATCCCTGCCGTTCATT
TGCGTAGAAAACAATAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(301-457)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-47)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(89-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.257

100

0.5