Detailed information NTG0481685

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AOC06_RS08015
• Genome accession: NZ_CP061298
• Coordinates: 1535340..1536230 (+)
• Length: 296 a.a.
• NCBI ID: WP_215380047.1
• Uniprot ID: -
• Organism: Polynucleobacter paludilacus strain MWH-Mekk-C3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1530340..1541230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOC06_RS07985 (AOC06_07990)	pth	1530559..1531149 (+)	591	WP_215380036.1	aminoacyl-tRNA hydrolase	-
AOC06_RS07990 (AOC06_07995)	-	1531146..1531409 (-)	264	WP_215380039.1	YfhL family 4Fe-4S dicluster ferredoxin	-
AOC06_RS07995 (AOC06_08000)	coaD	1531428..1531919 (-)	492	WP_215336393.1	pantetheine-phosphate adenylyltransferase	-
AOC06_RS08000 (AOC06_08005)	rsmD	1531955..1532572 (-)	618	WP_215380042.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AOC06_RS08005 (AOC06_08010)	-	1532575..1533912 (-)	1338	WP_215380043.1	pitrilysin family protein	-
AOC06_RS08010 (AOC06_08015)	-	1533909..1535279 (-)	1371	WP_215380045.1	pitrilysin family protein	-
AOC06_RS08015 (AOC06_08020)	pilA	1535340..1536230 (+)	891	WP_215380047.1	signal recognition particle-docking protein FtsY	Machinery gene
AOC06_RS08020 (AOC06_08025)	rpoH	1536401..1537264 (+)	864	WP_255880105.1	RNA polymerase sigma factor RpoH	-
AOC06_RS08025 (AOC06_08030)	-	1537275..1537865 (-)	591	WP_215380050.1	SCO family protein	-
AOC06_RS08030 (AOC06_08035)	cyoE	1537867..1538760 (-)	894	WP_215380052.1	heme o synthase	-
AOC06_RS08035 (AOC06_08040)	-	1538757..1539887 (-)	1131	WP_215380055.1	heme A synthase	-
AOC06_RS08040 (AOC06_08045)	-	1539887..1540543 (-)	657	WP_215380058.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32003.64 Da
• Isoelectric Point: 6.7753

>NTDB_id=481685 AOC06_RS08015 WP_215380047.1 1535340..1536230(+) (pilA) [Polynucleobacter paludilacus strain MWH-Mekk-C3]
MLGLRKTLGSLFKSSRIDEAWFDTLEESLIQSDVGMPTCTQLMTSLRQAAKSEKVQDSETLQALLIQELTKLLQPLEAHP
NPIFEHQNHHHPEIWLIVGVNGAGKTTTIGKLCKQFQSQGKSILLAAGDTFRAAARNQLLEWGQRNQVDVIAQESGDAAA
VAHDAIHAAISRKTDILVIDTAGRLATQDHLMEELKKVKRVIAKALPGAPHHTLLILDGNTGQNGLNQVRAFHEALELTG
LIVSKLDGTAKGGVICALAHTFQSGPKPAVLALGKGEGIEDLIPFNAAQYSSELFN

Nucleotide

• Length: 891 bp

>NTDB_id=481685 AOC06_RS08015 WP_215380047.1 1535340..1536230(+) (pilA) [Polynucleobacter paludilacus strain MWH-Mekk-C3]
ATGCTTGGCCTACGTAAAACCCTCGGATCGCTTTTTAAATCAAGCCGGATTGATGAGGCTTGGTTTGATACTCTGGAAGA
GTCCTTGATTCAGAGTGATGTGGGTATGCCAACCTGTACGCAATTAATGACTAGCTTACGTCAAGCCGCCAAATCAGAAA
AAGTCCAAGACTCAGAAACCCTACAAGCATTATTGATTCAAGAACTCACCAAGCTATTACAGCCATTGGAGGCTCACCCT
AACCCAATCTTTGAGCACCAAAACCATCATCATCCTGAAATCTGGCTGATTGTTGGCGTCAATGGCGCAGGTAAAACCAC
CACCATTGGTAAGCTCTGTAAACAATTTCAGTCACAGGGCAAATCGATTCTCCTAGCTGCTGGCGATACCTTTCGCGCAG
CCGCACGCAATCAACTCTTGGAGTGGGGACAGCGCAATCAGGTCGATGTCATTGCCCAAGAAAGTGGCGATGCAGCTGCA
GTAGCGCATGATGCTATTCATGCTGCAATCTCGCGCAAGACCGATATATTAGTCATTGACACTGCAGGCAGACTAGCGAC
ACAAGACCATTTGATGGAAGAGTTGAAGAAAGTCAAACGCGTCATTGCCAAGGCCCTCCCAGGAGCGCCTCATCACACAC
TCTTGATCTTGGATGGCAATACTGGTCAGAATGGTTTAAATCAAGTCAGAGCCTTTCATGAAGCCCTGGAGCTCACCGGT
CTTATCGTTAGCAAACTCGATGGGACTGCCAAAGGTGGGGTGATTTGCGCCCTTGCTCACACCTTTCAAAGCGGCCCCAA
ACCCGCAGTTCTAGCGCTGGGCAAAGGTGAGGGAATTGAGGATTTAATCCCCTTCAATGCTGCTCAATATTCATCAGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (4-69)

• SRP54-type protein, GTPase domain (SRP54) (93-295)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.195	98.986	0.507