Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | AOC06_RS02935 | Genome accession | NZ_CP061298 |
| Coordinates | 537604..538968 (+) | Length | 454 a.a. |
| NCBI ID | WP_215381100.1 | Uniprot ID | - |
| Organism | Polynucleobacter paludilacus strain MWH-Mekk-C3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 532604..543968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOC06_RS02925 (AOC06_02930) | - | 535126..537066 (+) | 1941 | WP_215381096.1 | potassium transporter Kup | - |
| AOC06_RS02930 (AOC06_02935) | - | 537063..537566 (+) | 504 | WP_215381098.1 | hypothetical protein | - |
| AOC06_RS02935 (AOC06_02940) | radA | 537604..538968 (+) | 1365 | WP_215381100.1 | DNA repair protein RadA | Machinery gene |
| AOC06_RS02940 (AOC06_02945) | prmB | 538965..539864 (-) | 900 | WP_215381102.1 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | - |
| AOC06_RS02945 (AOC06_02950) | dapE | 539894..541045 (-) | 1152 | WP_215381104.1 | succinyl-diaminopimelate desuccinylase | - |
| AOC06_RS02950 (AOC06_02955) | dapD | 541052..541879 (-) | 828 | WP_215381107.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
Sequence
Protein
Download Length: 454 a.a. Molecular weight: 48348.18 Da Isoelectric Point: 7.6369
>NTDB_id=481677 AOC06_RS02935 WP_215381100.1 537604..538968(+) (radA) [Polynucleobacter paludilacus strain MWH-Mekk-C3]
MAKAKTIYICQSCGGTSAKWQGQCPACQAWNTMEEGFPESSTPSRFQGLAQSLPRQKLAAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMHVLYSSGEESAAQIALRAKRIALDAPALEVLAEIQLEKLLSIME
TVKPQVLVVDSIQTLYSEAFSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVSNPSAIFLSQHEQMVPGACVLVTQEGTRPLLVEIQALVDTAHIPNPR
RLAVGLEQHRLAMLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFKLAIIPKANMPKNKIAGLKVIPVERIDQAIAAANELS
MAKAKTIYICQSCGGTSAKWQGQCPACQAWNTMEEGFPESSTPSRFQGLAQSLPRQKLAAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMHVLYSSGEESAAQIALRAKRIALDAPALEVLAEIQLEKLLSIME
TVKPQVLVVDSIQTLYSEAFSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVSNPSAIFLSQHEQMVPGACVLVTQEGTRPLLVEIQALVDTAHIPNPR
RLAVGLEQHRLAMLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFKLAIIPKANMPKNKIAGLKVIPVERIDQAIAAANELS
Nucleotide
Download Length: 1365 bp
>NTDB_id=481677 AOC06_RS02935 WP_215381100.1 537604..538968(+) (radA) [Polynucleobacter paludilacus strain MWH-Mekk-C3]
TTGGCTAAAGCTAAAACGATATATATCTGTCAGTCTTGTGGTGGCACTTCTGCCAAGTGGCAAGGGCAGTGCCCTGCTTG
TCAGGCTTGGAACACGATGGAGGAGGGTTTCCCTGAGTCCAGTACGCCATCCCGTTTTCAGGGCTTAGCCCAATCTTTAC
CCAGACAAAAATTGGCGGCGATTACTGCGGAAGATTTGCCTCGCTTTAGCACGGGGGTTGAGGAGTTTGATCGAGTTCTG
GGCGGCGGCTTAGTTCCAGGTGGTGTTGTTTTGTTGGGTGGTGACCCTGGTATTGGTAAGTCAACTCTGTTACTCCAAGC
TTTGGCCGAGATGAGTTCGGCCGGCATGCATGTGCTGTATAGCAGTGGAGAAGAGTCTGCTGCGCAAATTGCATTGCGGG
CTAAACGGATTGCTTTAGATGCTCCTGCACTGGAAGTGCTGGCTGAGATTCAGTTGGAGAAACTGTTATCGATTATGGAA
ACAGTAAAGCCTCAAGTGCTGGTAGTAGATTCCATTCAAACCCTGTATTCAGAGGCCTTTAGTTCTGCGCCAGGTTCGGT
TGCTCAGGTTCGTGAGTGTGCTGCGCAACTCACTCGAGCTGCTAAGTCTAGTGGAATCTGTGTTTTGATGGTGGGGCACG
TTACGAAAGATGGACATCTTGCTGGACCTCGCGTCTTGGAGCACATTGTCGACACAGTTCTATATTTCGAGGGTGATACG
CATTCTTCATTTAGATTAGTGCGCTCCATTAAGAATCGCTTTGGCGCTGTTAATGAGCTCGGGGTTTTTGCGATGACTGA
AAAAGGCTTGCGTGGTGTATCTAATCCGTCGGCAATTTTCTTGTCACAGCACGAGCAGATGGTGCCCGGCGCCTGTGTCT
TAGTGACTCAAGAAGGCACAAGACCGCTCTTGGTGGAGATTCAGGCGCTCGTCGATACTGCTCATATTCCCAATCCGCGA
AGATTGGCGGTGGGTCTAGAGCAGCATCGTTTGGCAATGTTGCTGGCAGTTTTACATCGCCATGCTGGGGTTGCTTGTTT
TGATCAAGATGTATTTCTAAATGCAGTAGGGGGAGTTAAAATTACTGAGCCTGCCGCTGACTTGGCAGTGTTACTGGCAA
TTCAATCATCCATTCGTAATCGCGCACTGCCAAAAGAGTTGATTGTCTTTGGAGAAGTAGGCTTAGCAGGAGAGATTCGC
CCATGCCCACGAGGTCAGGAGCGACTCAAGGAAGCTGCTAAATTGGGCTTCAAGTTGGCGATCATTCCGAAAGCCAATAT
GCCAAAGAATAAAATTGCTGGACTGAAAGTGATTCCCGTCGAGAGAATCGATCAGGCAATTGCTGCGGCGAATGAGCTTA
GTTAA
TTGGCTAAAGCTAAAACGATATATATCTGTCAGTCTTGTGGTGGCACTTCTGCCAAGTGGCAAGGGCAGTGCCCTGCTTG
TCAGGCTTGGAACACGATGGAGGAGGGTTTCCCTGAGTCCAGTACGCCATCCCGTTTTCAGGGCTTAGCCCAATCTTTAC
CCAGACAAAAATTGGCGGCGATTACTGCGGAAGATTTGCCTCGCTTTAGCACGGGGGTTGAGGAGTTTGATCGAGTTCTG
GGCGGCGGCTTAGTTCCAGGTGGTGTTGTTTTGTTGGGTGGTGACCCTGGTATTGGTAAGTCAACTCTGTTACTCCAAGC
TTTGGCCGAGATGAGTTCGGCCGGCATGCATGTGCTGTATAGCAGTGGAGAAGAGTCTGCTGCGCAAATTGCATTGCGGG
CTAAACGGATTGCTTTAGATGCTCCTGCACTGGAAGTGCTGGCTGAGATTCAGTTGGAGAAACTGTTATCGATTATGGAA
ACAGTAAAGCCTCAAGTGCTGGTAGTAGATTCCATTCAAACCCTGTATTCAGAGGCCTTTAGTTCTGCGCCAGGTTCGGT
TGCTCAGGTTCGTGAGTGTGCTGCGCAACTCACTCGAGCTGCTAAGTCTAGTGGAATCTGTGTTTTGATGGTGGGGCACG
TTACGAAAGATGGACATCTTGCTGGACCTCGCGTCTTGGAGCACATTGTCGACACAGTTCTATATTTCGAGGGTGATACG
CATTCTTCATTTAGATTAGTGCGCTCCATTAAGAATCGCTTTGGCGCTGTTAATGAGCTCGGGGTTTTTGCGATGACTGA
AAAAGGCTTGCGTGGTGTATCTAATCCGTCGGCAATTTTCTTGTCACAGCACGAGCAGATGGTGCCCGGCGCCTGTGTCT
TAGTGACTCAAGAAGGCACAAGACCGCTCTTGGTGGAGATTCAGGCGCTCGTCGATACTGCTCATATTCCCAATCCGCGA
AGATTGGCGGTGGGTCTAGAGCAGCATCGTTTGGCAATGTTGCTGGCAGTTTTACATCGCCATGCTGGGGTTGCTTGTTT
TGATCAAGATGTATTTCTAAATGCAGTAGGGGGAGTTAAAATTACTGAGCCTGCCGCTGACTTGGCAGTGTTACTGGCAA
TTCAATCATCCATTCGTAATCGCGCACTGCCAAAAGAGTTGATTGTCTTTGGAGAAGTAGGCTTAGCAGGAGAGATTCGC
CCATGCCCACGAGGTCAGGAGCGACTCAAGGAAGCTGCTAAATTGGGCTTCAAGTTGGCGATCATTCCGAAAGCCAATAT
GCCAAAGAATAAAATTGCTGGACTGAAAGTGATTCCCGTCGAGAGAATCGATCAGGCAATTGCTGCGGCGAATGAGCTTA
GTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.779 |
99.559 |
0.496 |
| radA | Streptococcus mitis NCTC 12261 |
46.911 |
96.256 |
0.452 |
| radA | Streptococcus pneumoniae Rx1 |
46.911 |
96.256 |
0.452 |
| radA | Streptococcus pneumoniae D39 |
46.911 |
96.256 |
0.452 |
| radA | Streptococcus pneumoniae R6 |
46.911 |
96.256 |
0.452 |
| radA | Streptococcus pneumoniae TIGR4 |
46.911 |
96.256 |
0.452 |
| radA | Streptococcus mitis SK321 |
46.911 |
96.256 |
0.452 |