Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   C2755_RS09400 Genome accession   NZ_CP061295
Coordinates   1882915..1883805 (+) Length   296 a.a.
NCBI ID   WP_215321083.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-S4W17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877915..1888805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2755_RS09370 (C2755_09375) pth 1878093..1878683 (+) 591 WP_215321079.1 aminoacyl-tRNA hydrolase -
  C2755_RS09375 (C2755_09380) - 1878705..1878971 (-) 267 WP_215321080.1 YfhL family 4Fe-4S dicluster ferredoxin -
  C2755_RS09380 (C2755_09385) coaD 1878997..1879494 (-) 498 WP_072582688.1 pantetheine-phosphate adenylyltransferase -
  C2755_RS09385 (C2755_09390) rsmD 1879531..1880103 (-) 573 WP_251368469.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2755_RS09390 (C2755_09395) - 1880150..1881487 (-) 1338 WP_215321081.1 pitrilysin family protein -
  C2755_RS09395 (C2755_09400) - 1881487..1882851 (-) 1365 WP_215321082.1 pitrilysin family protein -
  C2755_RS09400 (C2755_09405) pilA 1882915..1883805 (+) 891 WP_215321083.1 signal recognition particle-docking protein FtsY Machinery gene
  C2755_RS09405 (C2755_09410) rpoH 1883899..1884822 (+) 924 WP_215321084.1 RNA polymerase sigma factor RpoH -
  C2755_RS09410 (C2755_09415) - 1884864..1885448 (-) 585 WP_215321085.1 SCO family protein -
  C2755_RS09415 (C2755_09420) cyoE 1885456..1886349 (-) 894 WP_215321086.1 heme o synthase -
  C2755_RS09420 (C2755_09425) - 1886352..1887473 (-) 1122 WP_215321087.1 heme A synthase -
  C2755_RS09425 (C2755_09430) - 1887473..1888129 (-) 657 WP_215321088.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31333.84 Da        Isoelectric Point: 6.7586

>NTDB_id=481652 C2755_RS09400 WP_215321083.1 1882915..1883805(+) (pilA) [Polynucleobacter sp. MWH-S4W17]
MFGLRKTLGSLFKSSKVDESWFETLEESLIQSDVGLPTTEQLITKLRKAAKSEKASSPEELQTLLIQEVSALLTAIEPSP
NPLFTSDKPNTPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQEGGDAAA
VAHDAIHAAISRKNDILIIDTAGRLATQDNLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTG
IIVTKLDGTAKGGVICALAHTLQDGPKPAVLALGKGEGIEDLAPFTAGQYSSELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=481652 C2755_RS09400 WP_215321083.1 1882915..1883805(+) (pilA) [Polynucleobacter sp. MWH-S4W17]
ATGTTCGGCTTACGTAAAACCCTCGGATCCCTTTTCAAATCAAGCAAGGTTGATGAATCTTGGTTTGAAACCTTAGAAGA
ATCACTCATTCAAAGTGATGTGGGTCTACCTACGACTGAACAACTCATCACCAAACTACGAAAAGCAGCAAAGTCTGAAA
AGGCCTCTAGTCCAGAGGAGTTGCAAACTCTTCTCATTCAAGAAGTCAGCGCACTATTGACTGCTATTGAACCTTCACCA
AACCCACTATTTACAAGTGATAAGCCTAACACTCCAGAGGTGTGGTTGGTTGTAGGGGTAAATGGAGCCGGCAAGACTAC
GACCATTGGCAAACTTTGCCGACTCTTTCAGTCTCAGGGAAAATCAGTTCTCTTGGCTGCCGGCGATACTTTTAGAGCTG
CGGCACGTAACCAGCTTCAGGAGTGGGGTGGACGCAACCAGGTTGACGTTATTACTCAAGAAGGTGGTGATGCAGCAGCC
GTTGCACACGATGCCATTCATGCTGCCATCTCTCGCAAGAACGATATTCTCATCATTGACACTGCAGGCCGTCTCGCCAC
CCAGGACAACCTCATGGAAGAGCTCAAGAAAGTAAAACGTGTCATTGGTAAAGCACTTCCTGGGGCGCCTCACCACACCC
TGCTTGTTTTAGATGGCAATACTGGGCAGAACGGCTTGAGCCAAGTAAAGGCATTCCATGCCGCTCTTGGCCTGACTGGA
ATCATCGTTACCAAGCTTGATGGCACCGCTAAGGGCGGCGTGATCTGTGCCTTAGCCCACACCCTACAGGATGGCCCAAA
ACCCGCTGTTCTAGCCCTAGGCAAGGGCGAAGGGATTGAGGATTTAGCCCCCTTCACCGCAGGGCAATATTCATCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)

SRP54-type protein, GTPase domain (SRP54)

(92-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.901

98.986

0.524