Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2755_RS02810 Genome accession   NZ_CP061295
Coordinates   512354..513718 (+) Length   454 a.a.
NCBI ID   WP_215321681.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-S4W17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 507354..518718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2755_RS02790 (C2755_02790) - 509164..509535 (+) 372 WP_215321678.1 glycine zipper family protein -
  C2755_RS02800 (C2755_02800) - 509866..511809 (+) 1944 WP_215321679.1 potassium transporter Kup -
  C2755_RS02805 (C2755_02805) - 511821..512315 (+) 495 WP_251368521.1 hypothetical protein -
  C2755_RS02810 (C2755_02810) radA 512354..513718 (+) 1365 WP_215321681.1 DNA repair protein RadA Machinery gene
  C2755_RS02815 (C2755_02815) prmB 513723..514619 (-) 897 WP_215321682.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  C2755_RS02820 (C2755_02820) dapE 514666..515817 (-) 1152 WP_215321683.1 succinyl-diaminopimelate desuccinylase -
  C2755_RS02825 (C2755_02825) dapD 515827..516654 (-) 828 WP_072583047.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48193.94 Da        Isoelectric Point: 7.3470

>NTDB_id=481644 C2755_RS02810 WP_215321681.1 512354..513718(+) (radA) [Polynucleobacter sp. MWH-S4W17]
MAKVKSVYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPETTSNSRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSSAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLKVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481644 C2755_RS02810 WP_215321681.1 512354..513718(+) (radA) [Polynucleobacter sp. MWH-S4W17]
TTGGCTAAAGTCAAATCGGTTTATATCTGTCAGTCTTGTGGTGGTACCTCTGCTAAGTGGCAGGGCCAGTGCCCATCTTG
CCAGGCTTGGAATACTTTGGAAGAGGGTCTGCCAGAAACAACATCTAATTCTCGCTTCCAGGGCTTGGCGCAATCTCTTC
CAAGACAAAAGTTATCCGCTATTAGTGCTGAAGACCTACCGAGATTTAGCACAGGCGTTGAAGAGTTTGATCGCGTTCTA
GGTGGTGGCTTGGTTCCTGGTGGCGTGGTACTTTTGGGTGGCGATCCTGGTATTGGTAAATCTACCTTGCTACTCCAGGC
ATTAGCAGAGATGAGTTCTGCGGGCATGAATGTGCTCTATAGCAGCGGCGAAGAATCCGCTGCGCAGATTGCTCTGCGTG
CAAAGCGTATTGCTTTAGATGCACCTCAGCTTGAAGTGTTGGCGGAGATTCAGCTGGAAAAACTGATTTCGATTATGGAT
ACCGTGAAGCCGCAAGTATTGGTAGTGGATTCGATTCAGACTTTGTATTCAGAGGTGTTAAGTTCAGCTCCTGGCTCTGT
TGCGCAGGTTCGTGAGTGTGCGGCGCAGCTCACTAGGGCCGCTAAATCAAGTGGTATCTGTGTGCTGATGGTCGGGCACG
TTACCAAGGATGGTCATCTTGCTGGTCCTAGGGTCTTAGAGCACATTGTCGATACCGTTTTGTATTTTGAGGGTGATACA
CATTCCTCTTTTCGCTTAGTGCGTTCAATTAAGAATCGTTTTGGCGCAGTCAATGAGCTGGGCGTATTTGCAATGACTGA
AAAAGGTCTGCGCGGTGTAACTAATCCATCAGCAATTTTTCTGTCACAACATGAGCAAATGGTTCCGGGCGCTTGTGTAT
TGGTGACCCAAGAGGGTAGTAGACCTTTGCTGGTAGAGATTCAGGCTTTAGTAGATACGGCGCATGTGCCTAATCCCCGT
CGTTTAGCGGTTGGCTTGGAGCAAGCTCGTTTAGCGATGCTCTTGGCGGTACTGCATCGTCATGCTGGCGTCGCTTGTTT
TGATCAAGATGTTTTCTTAAATGCGGTAGGTGGCGTCAAGATTTCTGAGCCGGCCGCTGACTTAGCCGTTCTTCTGGCGA
TTCAGTCTTCGATTCGCAATCGCGCATTGCCAAAAGAGTTGATTGTCTTTGGTGAAGTAGGTTTGGCTGGTGAGATTCGT
CCTTGTCCTCGTGGTCAAGAGCGCTTGAAAGAAGCTGCTAAATTAGGCTTCACTGTTGCCATTATTCCAAAAGCAAATAT
GCCCAAGACCAAGATTCCGGGATTGAAAGTAATTCCAGTCGAGCGAATTGATCAAGCCATTGCTGCGGCTGCTGAGCTGA
GTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

99.559

0.493
  radA Streptococcus pneumoniae Rx1

45.556

99.119

0.452
  radA Streptococcus pneumoniae D39

45.556

99.119

0.452
  radA Streptococcus pneumoniae R6

45.556

99.119

0.452
  radA Streptococcus pneumoniae TIGR4

45.556

99.119

0.452
  radA Streptococcus mitis NCTC 12261

45.556

99.119

0.452
  radA Streptococcus mitis SK321

45.556

99.119

0.452