Detailed information NTG0481642

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ICV01_RS08480
• Genome accession: NZ_CP061294
• Coordinates: 1676622..1677512 (+)
• Length: 296 a.a.
• NCBI ID: WP_215287440.1
• Uniprot ID: -
• Organism: Polynucleobacter sp. MWH-Spelu-300-X4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1671622..1682512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ICV01_RS08450 (ICV01_08440)	pth	1671907..1672497 (+)	591	WP_215287432.1	aminoacyl-tRNA hydrolase	-
ICV01_RS08455 (ICV01_08445)	-	1672494..1672757 (-)	264	WP_215287433.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ICV01_RS08460 (ICV01_08450)	coaD	1672771..1673244 (-)	474	WP_215287434.1	pantetheine-phosphate adenylyltransferase	-
ICV01_RS08465 (ICV01_08455)	rsmD	1673271..1673870 (-)	600	WP_215287435.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ICV01_RS08470 (ICV01_08460)	-	1673867..1675198 (-)	1332	WP_215287436.1	pitrilysin family protein	-
ICV01_RS08475 (ICV01_08465)	-	1675200..1676600 (-)	1401	WP_215287438.1	pitrilysin family protein	-
ICV01_RS08480 (ICV01_08470)	pilA	1676622..1677512 (+)	891	WP_215287440.1	signal recognition particle-docking protein FtsY	Machinery gene
ICV01_RS08485 (ICV01_08475)	rpoH	1677588..1678454 (+)	867	WP_215287442.1	RNA polymerase sigma factor RpoH	-
ICV01_RS08490 (ICV01_08480)	-	1678478..1679080 (-)	603	WP_215287444.1	SCO family protein	-
ICV01_RS08495 (ICV01_08485)	cyoE	1679083..1679940 (-)	858	WP_215289191.1	heme o synthase	-
ICV01_RS08500 (ICV01_08490)	-	1679964..1681070 (-)	1107	WP_215287446.1	heme A synthase	-
ICV01_RS08505 (ICV01_08495)	-	1681070..1681732 (-)	663	WP_251369345.1	hypothetical protein	-
ICV01_RS08510 (ICV01_08500)	-	1681722..1682423 (-)	702	WP_215287448.1	SURF1 family protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31787.47 Da
• Isoelectric Point: 6.1443

>NTDB_id=481642 ICV01_RS08480 WP_215287440.1 1676622..1677512(+) (pilA) [Polynucleobacter sp. MWH-Spelu-300-X4]
MFGLRKTLSSLFSRQKIDEEWYDSLEEALLLGDVGMKATQSLIASLRAEAKKQKAETVEELKELLAQLIENLLKRLERPL
NPLLSFQKSSLNPQVWIVVGVNGAGKTTSIGKLCHYFQASGHKVLLGAGDTFRAAAREQLMTWGERNQVAVITQQGGDAA
AVAHDSVKAGQSRNMDLVVIDTAGRLSTQANLMDELKKVKRVTAKAQDDAPNETILVIDGNTGQNGLSQVKAFHEALGLT
AIIVTKLDGTAKGGILCAIAEELPENTPSVIALGLGEGIDDLKPFSASEFAKSLVP

Nucleotide

• Length: 891 bp

>NTDB_id=481642 ICV01_RS08480 WP_215287440.1 1676622..1677512(+) (pilA) [Polynucleobacter sp. MWH-Spelu-300-X4]
ATGTTCGGATTACGTAAAACCCTATCTAGCCTATTTAGCAGGCAAAAAATTGATGAAGAATGGTATGACTCTCTAGAAGA
AGCGCTTCTTTTAGGTGATGTTGGCATGAAAGCCACCCAATCTCTCATCGCCTCTCTCAGAGCTGAAGCCAAAAAACAAA
AGGCTGAAACTGTTGAGGAACTCAAAGAACTGCTGGCGCAACTCATTGAAAACTTACTAAAACGCCTAGAAAGACCTCTT
AACCCATTACTCAGTTTTCAAAAATCTTCGTTAAACCCACAAGTTTGGATAGTAGTGGGTGTTAATGGGGCGGGGAAAAC
CACCAGTATCGGTAAGCTTTGTCACTACTTTCAGGCTTCCGGTCATAAAGTTTTGTTAGGAGCTGGAGATACTTTTAGAG
CCGCTGCAAGAGAACAATTAATGACGTGGGGTGAACGTAACCAAGTTGCGGTTATCACTCAACAAGGAGGCGATGCCGCA
GCCGTTGCGCATGACTCAGTCAAGGCAGGTCAATCTAGAAATATGGATTTAGTTGTCATTGATACAGCAGGCCGGCTAAG
CACGCAAGCCAACCTAATGGATGAACTCAAGAAAGTGAAACGCGTCACTGCTAAAGCCCAAGACGATGCTCCTAACGAGA
CAATTTTAGTAATTGATGGCAATACTGGTCAAAACGGCTTATCGCAAGTCAAGGCGTTCCACGAGGCTCTTGGCTTAACT
GCAATTATCGTTACAAAACTCGATGGAACGGCTAAAGGGGGGATTCTTTGCGCAATCGCTGAAGAGCTCCCAGAAAACAC
ACCTAGCGTGATTGCACTAGGCCTTGGGGAAGGGATTGATGACCTTAAGCCATTTTCGGCCTCAGAATTCGCTAAATCCC
TAGTTCCATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-294)

• SRP54-type protein, helical bundle domain (SRP54_N) (3-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.74	98.649	0.52