Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   C2757_RS08095 Genome accession   NZ_CP061293
Coordinates   1609061..1609951 (+) Length   296 a.a.
NCBI ID   WP_215374191.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Svant-W18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604061..1614951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2757_RS08065 (C2757_08070) pth 1604271..1604861 (+) 591 WP_215374176.1 aminoacyl-tRNA hydrolase -
  C2757_RS08070 (C2757_08075) - 1604867..1605136 (-) 270 WP_215374179.1 YfhL family 4Fe-4S dicluster ferredoxin -
  C2757_RS08075 (C2757_08080) coaD 1605153..1605650 (-) 498 WP_215374182.1 pantetheine-phosphate adenylyltransferase -
  C2757_RS08080 (C2757_08085) rsmD 1605687..1606301 (-) 615 WP_371817042.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2757_RS08085 (C2757_08090) - 1606294..1607631 (-) 1338 WP_215374185.1 pitrilysin family protein -
  C2757_RS08090 (C2757_08095) - 1607631..1608998 (-) 1368 WP_215374188.1 pitrilysin family protein -
  C2757_RS08095 (C2757_08100) pilA 1609061..1609951 (+) 891 WP_215374191.1 signal recognition particle-docking protein FtsY Machinery gene
  C2757_RS08100 (C2757_08105) rpoH 1610044..1610973 (+) 930 WP_215374194.1 RNA polymerase sigma factor RpoH -
  C2757_RS08105 (C2757_08110) - 1610982..1611572 (-) 591 WP_215374199.1 SCO family protein -
  C2757_RS08110 (C2757_08115) cyoE 1611574..1612467 (-) 894 WP_215374202.1 heme o synthase -
  C2757_RS08115 (C2757_08120) - 1612464..1613588 (-) 1125 WP_251366738.1 heme A synthase -
  C2757_RS08120 (C2757_08125) - 1613588..1614244 (-) 657 WP_215374205.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31450.18 Da        Isoelectric Point: 7.4797

>NTDB_id=481628 C2757_RS08095 WP_215374191.1 1609061..1609951(+) (pilA) [Polynucleobacter sp. MWH-Svant-W18]
MFGLRKTLGSLFKSSKIDEAWFDTLEESLIQSDVGLPTTEQLISKLRKAAKSEKASSPEELQALLIEEVATLLRVLEPSP
NPLFGPIKGSIPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKSVLLAAGDTFRAAARNQLQEWAGRNQVDVITQEGGDAAA
VAHDAIHSAISRKSDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALSLTG
IIVTKLDGTAKGGVICALAHTLQEGPKPAILALGKGEGIDDLAPFTARQYSSELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=481628 C2757_RS08095 WP_215374191.1 1609061..1609951(+) (pilA) [Polynucleobacter sp. MWH-Svant-W18]
ATGTTCGGCTTACGTAAAACCCTCGGATCCCTTTTTAAATCAAGCAAAATAGATGAAGCTTGGTTTGATACTTTAGAAGA
GTCACTGATTCAAAGTGACGTGGGACTCCCCACGACTGAACAACTGATTAGCAAGCTTCGCAAAGCGGCTAAATCTGAAA
AAGCATCTAGCCCTGAAGAGTTACAAGCCCTCCTGATTGAAGAGGTGGCTACTTTATTAAGGGTCCTAGAGCCCTCCCCA
AATCCACTCTTTGGGCCCATTAAAGGCAGCATCCCTGAGGTCTGGTTAGTGGTCGGCGTTAATGGCGCAGGTAAAACCAC
CACCATTGGCAAGCTTTGTAGACTCTTTCAATCTCAAGGTAAGTCCGTCTTACTGGCTGCAGGAGATACTTTTAGAGCGG
CGGCACGCAATCAATTACAAGAATGGGCTGGTCGCAATCAAGTAGACGTCATTACCCAAGAAGGCGGCGATGCTGCTGCG
GTTGCGCACGATGCAATTCATTCTGCGATCTCGCGCAAAAGCGACATTCTCATTATTGATACCGCTGGACGTCTGGCCAC
CCAAGACCACCTCATGGAAGAACTAAAGAAGGTCAAACGTGTTATCGGCAAGGCACTTCCTGGAGCGCCTCACCACACCT
TGCTAGTTCTGGATGGCAATACTGGACAGAATGGTTTAAGCCAAGTGAAGGCCTTTCACGCGGCCTTAAGTCTTACTGGA
ATCATCGTTACGAAGCTCGATGGCACTGCTAAGGGCGGCGTTATTTGCGCTTTGGCACATACCCTTCAAGAGGGGCCAAA
ACCGGCCATATTGGCCCTGGGCAAAGGTGAGGGTATTGATGATTTAGCCCCATTCACCGCCAGACAATATTCTTCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)

SRP54-type protein, GTPase domain (SRP54)

(92-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.56

98.986

0.52