Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2757_RS02565 Genome accession   NZ_CP061293
Coordinates   474225..475589 (+) Length   454 a.a.
NCBI ID   WP_215375745.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Svant-W18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469225..480589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2757_RS02545 (C2757_02550) - 470896..471435 (+) 540 WP_215375736.1 hypothetical protein -
  C2757_RS02555 (C2757_02560) - 471774..473714 (+) 1941 WP_215375739.1 potassium transporter Kup -
  C2757_RS02560 (C2757_02565) - 473726..474217 (+) 492 WP_215375742.1 hypothetical protein -
  C2757_RS02565 (C2757_02570) radA 474225..475589 (+) 1365 WP_215375745.1 DNA repair protein RadA Machinery gene
  C2757_RS02570 (C2757_02575) prmB 475594..476490 (-) 897 WP_215375748.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  C2757_RS02575 (C2757_02580) dapE 476507..477658 (-) 1152 WP_215375751.1 succinyl-diaminopimelate desuccinylase -
  C2757_RS02580 (C2757_02585) dapD 477664..478491 (-) 828 WP_215375754.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48124.94 Da        Isoelectric Point: 7.3469

>NTDB_id=481620 C2757_RS02565 WP_215375745.1 474225..475589(+) (radA) [Polynucleobacter sp. MWH-Svant-W18]
MAKVKTVYVCQSCGGTSAKWSGQCPSCQAWNTMEEGLPETTSNARFQGLAQSLPRQKLSAIAAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSASGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNKALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLKVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481620 C2757_RS02565 WP_215375745.1 474225..475589(+) (radA) [Polynucleobacter sp. MWH-Svant-W18]
TTGGCTAAAGTTAAAACGGTTTATGTCTGCCAGTCATGTGGCGGGACTTCTGCGAAGTGGTCGGGTCAATGCCCATCTTG
TCAGGCCTGGAATACGATGGAGGAGGGCTTACCCGAGACCACCTCGAATGCTCGCTTTCAGGGCTTGGCACAATCACTAC
CAAGACAAAAGCTTTCTGCTATTGCAGCTGAAGATCTACCAAGATTTAGTACGGGCGTAGAAGAGTTCGATCGTGTTTTA
GGTGGTGGACTTGTTCCAGGTGGTGTTGTGCTTTTAGGCGGTGACCCTGGTATTGGCAAGTCGACACTCTTATTGCAAGC
TTTGGCCGAAATGAGTGCATCTGGTATGAATGTGCTCTATAGCAGCGGTGAAGAATCTGCAGCGCAAATTGCATTGCGGG
CTAAACGTATTGCTTTGGATGCGCCTCAATTAGAGGTCTTAGCAGAAATTCAGTTAGAAAAACTGATCTCAATCATGGAT
ACCGTCAAACCACAGGTATTGGTGGTGGACTCTATTCAAACTTTATATTCAGAAGTGCTCAGTTCGGCTCCTGGCTCTGT
GGCGCAAGTACGGGAGTGCGCTGCGCAGTTAACCAGGGCAGCAAAATCGAGTGGCATTTGCGTATTGATGGTGGGCCATG
TGACGAAAGACGGCCACCTTGCAGGCCCCAGAGTTCTGGAGCACATCGTGGATACGGTTTTGTATTTTGAGGGCGATACG
CATTCCTCGTTTCGATTGGTGCGTTCAATCAAGAATCGTTTCGGGGCCGTGAATGAATTAGGTGTTTTCGCCATGACTGA
AAAAGGTCTGCGTGGCGTCACTAATCCTTCTGCAATTTTCTTATCGCAACATGAACAAATGGTGCCAGGAGCTTGCGTCT
TAGTAACGCAAGAGGGCAGTAGACCGTTATTGGTTGAAATTCAGGCATTGGTTGATACCGCGCATGTTCCTAATCCACGG
CGCTTGGCTGTTGGCTTAGAGCAAGCCCGCCTTGCTATGCTCTTGGCCGTCTTGCATCGCCATGCAGGTATCGCATGTTT
TGATCAGGATGTTTTCTTAAACGCGGTGGGTGGAGTAAAAATTTCTGAGCCCGCGGCTGACCTAGCAGTGCTCTTGGCGA
TCCAGTCATCGATTCGCAATAAGGCTCTGCCCAAAGAGCTGATCGTCTTTGGTGAGGTGGGTTTGGCTGGCGAAATCCGT
CCATGCCCACGGGGTCAAGAACGTCTTAAAGAGGCTGCCAAACTGGGTTTTACTGTCGCCATTATTCCCAAGGCCAATAT
GCCTAAGACGAAGATTCCAGGCTTAAAAGTAATACCAGTAGAGCGGATTGATCAAGCGATAGCAGCAGCAGCTGAACTCA
GTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

99.559

0.493
  radA Streptococcus pneumoniae Rx1

46.222

99.119

0.458
  radA Streptococcus pneumoniae D39

46.222

99.119

0.458
  radA Streptococcus pneumoniae R6

46.222

99.119

0.458
  radA Streptococcus pneumoniae TIGR4

46.222

99.119

0.458
  radA Streptococcus mitis NCTC 12261

46.222

99.119

0.458
  radA Streptococcus mitis SK321

46.222

99.119

0.458