Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FD961_RS08650 Genome accession   NZ_CP061291
Coordinates   1734415..1735305 (+) Length   296 a.a.
NCBI ID   WP_215393488.1    Uniprot ID   -
Organism   Polynucleobacter sp. TSB-Sco08W16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1729415..1740305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD961_RS08620 (FD961_08620) pth 1729638..1730228 (+) 591 WP_215393483.1 aminoacyl-tRNA hydrolase -
  FD961_RS08625 (FD961_08625) - 1730225..1730491 (-) 267 WP_215393484.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FD961_RS08630 (FD961_08630) coaD 1730509..1731006 (-) 498 WP_215393485.1 pantetheine-phosphate adenylyltransferase -
  FD961_RS08635 (FD961_08635) rsmD 1731043..1731657 (-) 615 WP_371817172.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FD961_RS08640 (FD961_08640) - 1731650..1732987 (-) 1338 WP_215393486.1 pitrilysin family protein -
  FD961_RS08645 (FD961_08645) - 1732984..1734351 (-) 1368 WP_215393487.1 pitrilysin family protein -
  FD961_RS08650 (FD961_08650) pilA 1734415..1735305 (+) 891 WP_215393488.1 signal recognition particle-docking protein FtsY Machinery gene
  FD961_RS08655 (FD961_08655) rpoH 1735398..1736327 (+) 930 WP_215393489.1 RNA polymerase sigma factor RpoH -
  FD961_RS08660 (FD961_08660) - 1736350..1736940 (-) 591 WP_371817151.1 SCO family protein -
  FD961_RS08665 (FD961_08665) cyoE 1736942..1737835 (-) 894 WP_371817152.1 heme o synthase -
  FD961_RS08670 (FD961_08670) - 1737832..1738935 (-) 1104 WP_215393491.1 heme A synthase -
  FD961_RS08675 (FD961_08675) - 1738935..1739591 (-) 657 WP_215393492.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31250.81 Da        Isoelectric Point: 6.8447

>NTDB_id=481606 FD961_RS08650 WP_215393488.1 1734415..1735305(+) (pilA) [Polynucleobacter sp. TSB-Sco08W16]
MFGLRKTLGSLFKSSKTDDAWFDALEESLIQSDVGLPTTEDLISKLRKAAKSEKASSPDELQALLIQEVAALLTVLEPSP
NPLFTGSKENIPEVWLVVGVNGAGKTTTIGKLCRIFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQEGGDAAA
VAHDAIHSAISRKSDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHMALGLTG
IIVTKLDGTAKGGVICALAHTLKDGTKPAVLALGKGEGIDDLAPFTAGQYSSELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=481606 FD961_RS08650 WP_215393488.1 1734415..1735305(+) (pilA) [Polynucleobacter sp. TSB-Sco08W16]
ATGTTCGGCCTACGTAAAACCCTTGGATCTCTATTTAAATCAAGCAAGACTGATGACGCTTGGTTTGATGCCTTAGAAGA
GTCGCTCATTCAGAGTGATGTGGGATTGCCTACGACTGAGGATTTGATTAGCAAACTACGCAAAGCAGCGAAATCCGAAA
AGGCTTCAAGCCCTGATGAACTACAAGCCCTTCTGATTCAAGAGGTTGCTGCCTTATTAACAGTGCTTGAGCCATCCCCT
AACCCACTATTTACAGGGTCTAAAGAGAATATCCCTGAAGTGTGGCTGGTTGTTGGCGTCAACGGTGCAGGGAAAACCAC
CACCATTGGTAAGCTTTGTAGAATTTTTCAATCCCAAGGTAAGTCCGTTCTCTTAGCCGCAGGGGATACCTTTAGGGCAG
CTGCGCGCAACCAGCTACAAGAATGGGGCGGTCGCAATCAAGTGGACGTCATCACCCAAGAAGGTGGCGATGCTGCAGCC
GTAGCTCATGATGCAATTCACTCTGCCATCTCCCGCAAAAGCGATATTTTGATCATTGATACTGCAGGTCGTCTTGCTAC
TCAAGACCACCTCATGGAAGAGCTGAAGAAGGTCAAGCGTGTAATTGGCAAAGCACTTCCTGGGGCGCCTCATCACACAC
TATTGGTTTTAGATGGCAACACAGGACAAAATGGTTTAAGCCAAGTGAAGGCCTTTCACATGGCTCTGGGCCTGACTGGA
ATTATCGTTACCAAGCTAGATGGGACTGCTAAGGGAGGTGTTATCTGCGCCTTAGCCCATACCCTTAAAGATGGCACTAA
ACCAGCTGTTCTAGCACTAGGCAAGGGCGAGGGAATTGACGATTTAGCCCCCTTTACAGCCGGGCAATATTCCTCTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(92-295)

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.381

99.324

0.52