Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD961_RS06765 Genome accession   NZ_CP061291
Coordinates   1361807..1363171 (-) Length   454 a.a.
NCBI ID   WP_071465320.1    Uniprot ID   -
Organism   Polynucleobacter sp. TSB-Sco08W16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356807..1368171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD961_RS06750 (FD961_06750) dapD 1358865..1359692 (+) 828 WP_215393195.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  FD961_RS06755 (FD961_06755) dapE 1359704..1360855 (+) 1152 WP_215393196.1 succinyl-diaminopimelate desuccinylase -
  FD961_RS06760 (FD961_06760) prmB 1360898..1361794 (+) 897 WP_215393197.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  FD961_RS06765 (FD961_06765) radA 1361807..1363171 (-) 1365 WP_071465320.1 DNA repair protein RadA Machinery gene
  FD961_RS06770 (FD961_06770) - 1363207..1363716 (-) 510 WP_215393198.1 hypothetical protein -
  FD961_RS06775 (FD961_06775) - 1363713..1365653 (-) 1941 WP_215393199.1 potassium transporter Kup -
  FD961_RS06785 (FD961_06785) - 1365953..1367740 (-) 1788 WP_215393200.1 acyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48209.02 Da        Isoelectric Point: 7.6029

>NTDB_id=481601 FD961_RS06765 WP_071465320.1 1361807..1363171(-) (radA) [Polynucleobacter sp. TSB-Sco08W16]
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTMEEGLPETTSNARFQGLAQSLPRQKLSAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSASGMNVLYSSGEESAAQIALRAKRIALNAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKSKIPGLKVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481601 FD961_RS06765 WP_071465320.1 1361807..1363171(-) (radA) [Polynucleobacter sp. TSB-Sco08W16]
TTGGCTAAAGTCAAAACGGTTTATATCTGCCAATCTTGTGGCGGCACCTCTGCAAAATGGCAGGGCCAGTGCCCATCTTG
TCAGGCTTGGAACACGATGGAAGAGGGTTTACCAGAGACGACCTCGAATGCGCGTTTTCAAGGGTTGGCTCAATCATTGC
CAAGACAAAAACTATCCGCTATTACTGCGGAGGATTTGCCGCGATTCAGTACTGGCGTAGAAGAGTTCGATCGAGTATTG
GGTGGTGGCTTAGTTCCAGGTGGCGTGGTACTGCTGGGCGGTGATCCTGGTATCGGTAAGTCAACACTCTTACTGCAAGC
GCTTGCAGAGATGAGCGCTTCCGGTATGAATGTGCTCTATAGCAGCGGGGAAGAATCTGCGGCACAAATTGCTCTGCGTG
CAAAACGTATTGCATTGAATGCACCCCAACTCGAAGTGTTGGCAGAAATTCAGTTGGAGAAACTGATCTCCATTATGGAT
ACCGTAAAGCCACAAGTATTGGTGGTGGACTCTATACAAACTCTCTACTCCGAGGTACTTAGTTCGGCTCCTGGCTCTGT
AGCGCAAGTCAGGGAGTGCGCTGCTCAATTAACAAGAGCGGCTAAATCTAGCGGCATCTGTGTATTAATGGTGGGTCATG
TCACCAAAGATGGGCACTTAGCTGGACCACGTGTTTTGGAGCATATTGTTGATACCGTGTTGTACTTCGAGGGTGATACG
CACTCCTCGTTTCGCTTGGTACGATCCATTAAGAATCGCTTTGGCGCAGTCAATGAGCTTGGTGTATTTGCGATGACTGA
AAAAGGTCTTCGTGGCGTCACCAATCCATCTGCAATTTTCTTATCTCAACACGAGCAGATGGTTCCTGGGGCATGTGTCC
TAGTGACACAAGAGGGCAGTAGACCGCTCTTGGTTGAAATTCAGGCGCTGGTCGATACAGCGCATGTTCCTAACCCACGT
CGTTTGGCAGTTGGTTTGGAGCAAGCGCGTCTAGCAATGCTCTTGGCAGTACTGCATCGCCATGCTGGGGTGGCTTGCTT
TGATCAAGACGTGTTCTTAAATGCGGTGGGTGGCGTGAAGATTTCTGAGCCGGCAGCTGACTTGGCTGTGCTCTTAGCTA
TTCAATCATCGATTCGTAATCGTGCACTCCCTAAAGAGCTCATTGTGTTTGGTGAGGTTGGATTGGCTGGGGAAATACGT
CCATGCCCACGTGGTCAAGAGCGCTTAAAAGAGGCCGCAAAACTTGGATTTACTGTGGCGATCATTCCAAAAGCGAATAT
GCCTAAGTCTAAAATTCCAGGCTTAAAAGTCATTCCAGTAGAGCGCATTGATCAAGCCATCGCAGCGGCGGCCGAGCTCA
GTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.779

99.559

0.496
  radA Streptococcus pneumoniae Rx1

46

99.119

0.456
  radA Streptococcus pneumoniae D39

46

99.119

0.456
  radA Streptococcus pneumoniae R6

46

99.119

0.456
  radA Streptococcus pneumoniae TIGR4

46

99.119

0.456
  radA Streptococcus mitis NCTC 12261

46

99.119

0.456
  radA Streptococcus mitis SK321

46

99.119

0.456