Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICV36_RS02615 Genome accession   NZ_CP061285
Coordinates   485600..486964 (+) Length   454 a.a.
NCBI ID   WP_215400989.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH35A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 480600..491964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV36_RS02605 (ICV36_02595) - 483119..485062 (+) 1944 WP_215400987.1 potassium transporter Kup -
  ICV36_RS02610 (ICV36_02600) - 485110..485568 (+) 459 WP_251375055.1 hypothetical protein -
  ICV36_RS02615 (ICV36_02605) radA 485600..486964 (+) 1365 WP_215400989.1 DNA repair protein RadA Machinery gene
  ICV36_RS02620 (ICV36_02610) prmB 486965..487861 (-) 897 WP_215400990.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  ICV36_RS02625 (ICV36_02615) dapE 487908..489059 (-) 1152 WP_215400991.1 succinyl-diaminopimelate desuccinylase -
  ICV36_RS02630 (ICV36_02620) dapD 489068..489895 (-) 828 WP_215400992.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48176.96 Da        Isoelectric Point: 7.6029

>NTDB_id=481567 ICV36_RS02615 WP_215400989.1 485600..486964(+) (radA) [Polynucleobacter sp. MWH-UH35A]
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTLEEGLPETTSNSRFQGLAQSLPRQKLSAITAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALNAPQLEVLAEIQLEKLISIMD
TAKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKSSGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANMPKTKIPGLKVIPVERIDQAIAAAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=481567 ICV36_RS02615 WP_215400989.1 485600..486964(+) (radA) [Polynucleobacter sp. MWH-UH35A]
TTGGCTAAAGTCAAAACGGTTTATATCTGCCAGTCTTGCGGTGGTACGTCTGCCAAATGGCAGGGTCAGTGTCCATCTTG
CCAGGCTTGGAATACCTTGGAAGAAGGCCTTCCAGAAACCACTTCAAATTCACGATTTCAGGGGTTGGCGCAATCCTTGC
CAAGGCAAAAGCTCTCCGCAATTACTGCGGAAGACTTGCCAAGATTTAGTACGGGTGTCGAGGAGTTTGATCGTGTGCTG
GGTGGTGGCTTAGTTCCAGGTGGCGTAGTGCTCTTGGGTGGCGATCCTGGTATCGGTAAATCAACTTTGCTATTGCAAGC
GCTTGCAGAGATGAGCGCTGCTGGGATGAATGTCCTCTATAGCAGTGGTGAGGAATCTGCTGCACAGATTGCGCTGCGTG
CAAAGCGTATTGCATTAAACGCACCTCAATTGGAAGTATTGGCTGAAATTCAGTTAGAAAAACTGATTTCCATTATGGAT
ACCGCAAAGCCACAAGTGCTTGTGGTGGACTCCATTCAGACTTTGTATTCAGAGGTGCTAAGTTCAGCCCCTGGTTCTGT
GGCTCAGGTGCGCGAGTGCGCAGCGCAGCTTACTCGAGCGGCAAAATCCAGTGGTATCTGTGTATTGATGGTTGGGCACG
TTACCAAAGATGGTCATCTGGCTGGTCCTAGAGTTTTAGAGCACATTGTTGATACCGTTTTGTACTTCGAAGGCGATACC
CATTCTTCATTCCGCTTAGTGCGATCTATCAAGAATCGCTTTGGTGCAGTGAATGAGCTAGGTGTATTTGCAATGACCGA
GAAAGGTCTACGCGGCGTCACCAATCCGTCAGCAATCTTTTTGTCACAACATGAACAAATGGTTCCGGGTGCTTGCGTGC
TAGTGACGCAAGAGGGTAGTAGGCCCTTATTGGTGGAAATTCAGGCGCTAGTGGATACGGCGCATGTACCCAACCCTCGC
CGCCTTGCGGTTGGTTTGGAGCAGGCGCGCTTAGCAATGCTCTTAGCAGTGTTACATCGTCACGCTGGCGTAGCTTGCTT
TGATCAGGATGTTTTCTTAAACGCGGTGGGTGGTGTCAAGATTTCTGAGCCAGCTGCTGACTTAGCCGTTCTCCTTGCAA
TTCAGTCATCGATCCGCAATCGCGCTTTACCAAAAGAGTTAATTGTCTTTGGTGAGGTTGGTTTGGCGGGGGAGATTCGT
CCTTGCCCACGTGGTCAGGAGCGTTTGAAAGAAGCCGCTAAGTTAGGGTTTACTGTGGCCATCATTCCCAAAGCCAATAT
GCCTAAGACTAAGATTCCAGGATTGAAGGTAATTCCGGTTGAGCGAATTGATCAGGCAATTGCTGCTGCAGCCGAATTGA
GTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)

AAA domain (AAA_25)

(78-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

99.559

0.493
  radA Streptococcus pneumoniae Rx1

45.778

99.119

0.454
  radA Streptococcus pneumoniae D39

45.778

99.119

0.454
  radA Streptococcus pneumoniae R6

45.778

99.119

0.454
  radA Streptococcus pneumoniae TIGR4

45.778

99.119

0.454
  radA Streptococcus mitis NCTC 12261

45.778

99.119

0.454
  radA Streptococcus mitis SK321

45.778

99.119

0.454