Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ICJ61_RS18665 Genome accession   NZ_CP061284
Coordinates   3602114..3603508 (-) Length   464 a.a.
NCBI ID   WP_106019638.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597114..3608508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS18630 (ICJ61_18630) flgL 3597290..3598186 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  ICJ61_RS18635 (ICJ61_18635) flgK 3598196..3599719 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  ICJ61_RS18640 (ICJ61_18640) flgN 3599738..3600220 (-) 483 WP_106019636.1 flagellar protein FlgN -
  ICJ61_RS18645 (ICJ61_18645) flgM 3600236..3600502 (-) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  ICJ61_RS18650 (ICJ61_18650) - 3600582..3601001 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  ICJ61_RS18655 (ICJ61_18655) comFC 3601075..3601797 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  ICJ61_RS18660 (ICJ61_18660) - 3601761..3602057 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  ICJ61_RS18665 (ICJ61_18665) comFA 3602114..3603508 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  ICJ61_RS18670 (ICJ61_18670) - 3603615..3604460 (-) 846 WP_106019639.1 DegV family protein -
  ICJ61_RS18675 (ICJ61_18675) degU 3604557..3605246 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ICJ61_RS18680 (ICJ61_18680) degS 3605329..3606486 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  ICJ61_RS18685 (ICJ61_18685) - 3606703..3607356 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52784.87 Da        Isoelectric Point: 9.7189

>NTDB_id=481554 ICJ61_RS18665 WP_106019638.1 3602114..3603508(-) (comFA) [Bacillus halotolerans strain XH-1]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=481554 ICJ61_RS18665 WP_106019638.1 3602114..3603508(-) (comFA) [Bacillus halotolerans strain XH-1]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83